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The map label for this gene is ymdA

Identifier: 157160569

GI number: 157160569

Start: 1169087

End: 1169398

Strand: Direct

Name: ymdA

Synonym: EcHS_A1165

Alternate gene names: 157160569

Gene position: 1169087-1169398 (Clockwise)

Preceding gene: 157160566

Following gene: 157160570

Centisome position: 25.18

GC content: 43.59

Gene sequence:

>312_bases
ATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCA
AGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGA
ACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAA
ATAGCCTCAGTAAAAGTGCAGTATCTTGATAAACAGAAAAAGCTGGCTGTAATGAACATCGAATATAACTAA

Upstream 100 bases:

>100_bases
AAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAA
TCATTGAGGAAATAGAATAA

Downstream 100 bases:

>100_bases
GTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGG
TGTAAGGAGGCGTTATGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQ
IASVKVQYLDKQKKLAVMNIEYN

Sequences:

>Translated_103_residues
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQ
IASVKVQYLDKQKKLAVMNIEYN
>Mature_103_residues
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQ
IASVKVQYLDKQKKLAVMNIEYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To the N-terminal of the fimA/papA family of fimbria proteins

Homologues:

Organism=Escherichia coli, GI1787281, Length=103, Percent_Identity=100, Blast_Score=212, Evalue=4e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMDA_ECOLI (P75917)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   A64847
- RefSeq:   AP_001671.1
- RefSeq:   NP_415562.1
- STRING:   P75917
- EnsemblBacteria:   EBESCT00000003456
- EnsemblBacteria:   EBESCT00000016648
- GeneID:   949012
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1031
- KEGG:   eco:b1044
- EchoBASE:   EB3632
- EcoGene:   EG13873
- eggNOG:   NOG79954
- GeneTree:   EBGT00050000012039
- HOGENOM:   HBG467747
- OMA:   PRKTYSS
- ProtClustDB:   CLSK879945
- BioCyc:   EcoCyc:G6549-MONOMER
- Genevestigator:   P75917

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11194; Mature: 11194

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGS
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEHHHHHCCCCCCCCCCCCEEECCCCCCC
IPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
CCCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCEEEEEEECC
>Mature Secondary Structure
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGS
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEHHHHHCCCCCCCCCCCCEEECCCCCCC
IPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
CCCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503