Click here to switch to the map view.

The map label for this gene is ymdF

Identifier: 157160527

GI number: 157160527

Start: 1129099

End: 1129272

Strand: Direct

Name: ymdF

Synonym: EcHS_A1118

Alternate gene names: 157160527

Gene position: 1129099-1129272 (Clockwise)

Preceding gene: 157160524

Following gene: 157160528

Centisome position: 24.32

GC content: 51.72

Gene sequence:

>174_bases
ATGGCAAACCATCGAGGCGGTTCCGGCAATTTTGCAGAAGACCGCGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACA
GCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGCAAGAGCAGTCACGGCA
AAAGCGACAACTAG

Upstream 100 bases:

>100_bases
AGTTCACTAAGCTTAGTCCCACGTAGCGAAAATATGGCAGCCGCCATACGCCGCGTTAATTCTATGCAATATGATGTCTA
TACCCAGACGGAGGTCAGTA

Downstream 100 bases:

>100_bases
CCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATAC
TGATGACAAATGTAAGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 57; Mature: 56

Protein sequence:

>57_residues
MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN

Sequences:

>Translated_57_residues
MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
>Mature_56_residues
ANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN

Specific function: Unknown

COG id: COG3729

COG function: function code R; General stress protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the con-10 family

Homologues:

Organism=Escherichia coli, GI87081817, Length=57, Percent_Identity=100, Blast_Score=109, Evalue=3e-26,
Organism=Escherichia coli, GI87081862, Length=43, Percent_Identity=90.6976744186046, Blast_Score=80, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMDF_ECOLI (P56614)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C64842
- RefSeq:   AP_001636.1
- RefSeq:   NP_415525.2
- ProteinModelPortal:   P56614
- IntAct:   P56614
- STRING:   P56614
- EnsemblBacteria:   EBESCT00000004069
- EnsemblBacteria:   EBESCT00000017175
- GeneID:   945598
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5136
- KEGG:   eco:b4518
- EchoBASE:   EB4104
- EcoGene:   EG14358
- eggNOG:   COG3729
- GeneTree:   EBGT00050000009866
- HOGENOM:   HBG752117
- OMA:   GKNSHGS
- ProtClustDB:   CLSK950265
- BioCyc:   EcoCyc:MONOMER0-2665
- Genevestigator:   P56614
- InterPro:   IPR019626

Pfam domain/function: PF10685 KGG

EC number: NA

Molecular weight: Translated: 5883; Mature: 5752

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503