Click here to switch to the map view.

The map label for this gene is cspG

Identifier: 157160508

GI number: 157160508

Start: 1112298

End: 1112510

Strand: Direct

Name: cspG

Synonym: EcHS_A1099

Alternate gene names: 157160508

Gene position: 1112298-1112510 (Clockwise)

Preceding gene: 157160500

Following gene: 157160509

Centisome position: 23.95

GC content: 43.19

Gene sequence:

>213_bases
ATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAG
CAAAGACGTTTTCGTCCATTTCACTGCCATCCAGAGTAATGAATTCCGCACGCTGAACGAAAATCAGAAAGTTGAATTTT
CTATTGAGCAGGGGCAACGTGGCCCCGCGGCAGCGAACGTTGTTACGCTCTAA

Upstream 100 bases:

>100_bases
CAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCC
CAAAATGAAGGAAGTAAAAT

Downstream 100 bases:

>100_bases
GGTTGCCGTTATTACTCAACATCTCCATTTCCGCTGTCCATGTTGTCATGGTTCACAGTACCGTACATCGGCATTCGATG
TGACGGAGCGAAACCCTTTG

Product: cold shock protein CspG

Products: NA

Alternate protein names: CPS-G

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPAAANVVTL

Sequences:

>Translated_70_residues
MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPAAANVVTL
>Mature_69_residues
SNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPAAANVVTL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Homo sapiens, GI224586884, Length=72, Percent_Identity=43.0555555555556, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI224586882, Length=72, Percent_Identity=43.0555555555556, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34098946, Length=72, Percent_Identity=43.0555555555556, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=100, Blast_Score=145, Evalue=4e-37,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=78.5714285714286, Blast_Score=119, Evalue=6e-29,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=79.4117647058823, Blast_Score=116, Evalue=4e-28,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=72.8571428571428, Blast_Score=115, Evalue=5e-28,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=67.6470588235294, Blast_Score=101, Evalue=1e-23,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=68.6567164179104, Blast_Score=99, Evalue=4e-23,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=46.875, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=6e-13,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=46.2686567164179, Blast_Score=65, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=47.6190476190476, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPG_ECO57 (P0A980)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A90772
- RefSeq:   NP_286926.1
- RefSeq:   NP_309172.1
- ProteinModelPortal:   P0A980
- SMR:   P0A980
- MINT:   MINT-1247746
- PRIDE:   P0A980
- EnsemblBacteria:   EBESCT00000025229
- EnsemblBacteria:   EBESCT00000060458
- GeneID:   912577
- GeneID:   959053
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1406
- KEGG:   ecs:ECs1145
- GeneTree:   EBGT00050000010462
- HOGENOM:   HBG717773
- OMA:   ASESVHI
- ProtClustDB:   PRK09890
- BioCyc:   ECOL83334:ECS1145-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7781; Mature: 7650

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR
CCCCCCEEEEEECCCCCCEEEECCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCCCC
GPAAANVVTL
CCCCEEEEEC
>Mature Secondary Structure 
SNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR
CCCCCEEEEEECCCCCCEEEECCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCCCC
GPAAANVVTL
CCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796