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The map label for this gene is ymcC

Identifier: 157160505

GI number: 157160505

Start: 1110302

End: 1110946

Strand: Reverse

Name: ymcC

Synonym: EcHS_A1096

Alternate gene names: 157160505

Gene position: 1110946-1110302 (Counterclockwise)

Preceding gene: 157160506

Following gene: 157160504

Centisome position: 23.92

GC content: 47.75

Gene sequence:

>645_bases
GTGCGCCCTCTTATTTTATCGATTTTCGCACTATTTCTTGCGGGATGTACGCACAGCCAGCAAAGTATGGTCGATACATT
TCGCGCCAGCCTTTTCGATAATCAGGATATCACCGTAGCGGATCAGCAGATCCAGGCGTTGCCTTATTCCACGATGTATT
TACGCCTTAATGAAGGGCAACGAATCTTTGTGGTACTGGGATATATAGAACAAGAACAAAGCAAATGGTTATCCCAGGAT
AACGCCATGCTGGTTACCCACAATGGACGTCTTTTAAAAACCGTCAAACTTAATAATAATCTGCTGGAAGTGACAAATTC
CGGGCAGGACCCTCTGCGTAACGCGCTGGCAATAAAAGATGGCAGCCGCTGGACGCGCGATATTCTCTGGAGTGAAGACA
ACCATTTTCGCTCTGCGACCCTGAGTTCTACTTTTTCCTTTGCTGGATTAGAGACGCTGAATATTGCGGGTCGCAATGTG
CTGTGTAATGTCTGGCAGGAAGAGGTGACTTCCACGCGGCCAGAAAAACAGTGGCAAAACACATTCTGGGTCGATTCGGC
TACTGGCCAGGTTCGTCAAAGTCGGCAAATGTTAGGCGCAGGGGTTATTCCCGTAGAAATGACGTTTCTTAAACCCGCAC
CATGA

Upstream 100 bases:

>100_bases
TTTAACGCGTCGAAATTAAAGTTAAATGATACCCGGTTGCGATATTCGTACCGGGCTTTAGAGATTTGCATTTTTTTAAT
TAACCTTTCAAGGATTAAAG

Downstream 100 bases:

>100_bases
ATAAATTACAGTCGTATTTCATTGCCAGCGTACTTTACGTAATGACACCCCATGCCTTTGCGCAAGGAACGGTGACTATT
TATCTGCCTGGCGAACAACA

Product: group 4 capsule (G4C) polysaccharide, lipoprotein YmcC

Products: NA

Alternate protein names: Group 4 capsule protein B homolog

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP

Sequences:

>Translated_214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
>Mature_214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbF

Homologues:

Organism=Escherichia coli, GI1787221, Length=214, Percent_Identity=100, Blast_Score=444, Evalue=1e-126,
Organism=Escherichia coli, GI87082360, Length=212, Percent_Identity=38.6792452830189, Blast_Score=160, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GFCB_ECOLI (P75884)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   H64839
- RefSeq:   AP_001615.1
- RefSeq:   NP_415506.1
- PDB:   2IN5
- PDBsum:   2IN5
- ProteinModelPortal:   P75884
- SMR:   P75884
- DIP:   DIP-12709N
- MINT:   MINT-1301421
- STRING:   P75884
- EnsemblBacteria:   EBESCT00000002504
- EnsemblBacteria:   EBESCT00000016294
- GeneID:   949118
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0969
- KEGG:   eco:b0986
- EchoBASE:   EB3495
- EcoGene:   EG13731
- eggNOG:   NOG10412
- GeneTree:   EBGT00050000011017
- HOGENOM:   HBG416876
- OMA:   KSIQYLG
- ProtClustDB:   CLSK879894
- BioCyc:   EcoCyc:G6507-MONOMER
- Genevestigator:   P75884
- InterPro:   IPR021308

Pfam domain/function: PF11102 DUF2886

EC number: NA

Molecular weight: Translated: 24268; Mature: 24268

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQ
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCEEEEEEECCCC
RIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKD
EEEEEEEEHHHHHHHHHCCCCCEEEEECCEEEEEEEECCCEEEECCCCCCHHHHHEEECC
GSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNVLCNVWQEEVTSTRPEKQWQN
CCCHHHHHCCCCCCCEEEHHHHCCHHHCCCEEEEECCCHHEEHHHHHHHHCCCCCHHHCC
TFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
EEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCC
>Mature Secondary Structure
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQ
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCEEEEEEECCCC
RIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKD
EEEEEEEEHHHHHHHHHCCCCCEEEEECCEEEEEEEECCCEEEECCCCCCHHHHHEEECC
GSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNVLCNVWQEEVTSTRPEKQWQN
CCCHHHHHCCCCCCCEEEHHHHCCHHHCCCEEEEECCCHHEEHHHHHHHHCCCCCHHHCC
TFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
EEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503