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The map label for this gene is ymcB

Identifier: 157160504

GI number: 157160504

Start: 1109559

End: 1110305

Strand: Reverse

Name: ymcB

Synonym: EcHS_A1095

Alternate gene names: 157160504

Gene position: 1110305-1109559 (Counterclockwise)

Preceding gene: 157160505

Following gene: 157160503

Centisome position: 23.91

GC content: 52.21

Gene sequence:

>747_bases
ATGAATAAATTACAGTCGTATTTCATTGCCAGCGTACTTTACGTAATGACACCCCATGCCTTTGCGCAAGGAACGGTGAC
TATTTATCTGCCTGGCGAACAACAGACACTTTCCGTTGGCCCCGTGGAAAATGTTGTCCAGTTGGTGACACAACCGCAAC
TGCGCGATCGCCTCTGGTGGCCTGGTGCCTTGCTGACCGACTCTGCGGCGAAAGCTAAAGCGCTTAAAGACTACCAACAT
GTCATGGCACAGCTTGCTTCCTGGGAAGCAGAAGCTGACGACGATGTGGCGGCAACGATTAAATCCGTGCGCCAGCAGTT
ACTCAATCTCAATATCACTGGTCGCTTACCGGTCAAACTGGATCCTGATTTTGTACGAGTGGATGAGAACAGCAATCCCC
CGTTGGTCGGGGACTATACGCTCTATACCGTACAGCGTCCGGTGACTATTACTCTGCTGGGTGCGGTTTCTGGGGCCGGG
CAATTGCCCTGGCAGGCAGGCCGTAGCGTTACCGATTATCTGCAAGATCACCCCCGCCTTGCAGGCGCGGACAAGAATAA
CGTTATGGTGATTACGCCTGAGGGTGAGACTGTCGTCGCCCCTGTTGCCCTGTGGAATAAAAGACATGTGGAACCACCGC
CTGGCAGCCAGCTTTGGTTGGGCTTTTCTGCGCATGTACTGCCCGAAAAATATGCTGATTTAAATGACCAGATTGTGTCT
GTTTTAACGCAACGTGTTCCTGACTGA

Upstream 100 bases:

>100_bases
CATTCTGGGTCGATTCGGCTACTGGCCAGGTTCGTCAAAGTCGGCAAATGTTAGGCGCAGGGGTTATTCCCGTAGAAATG
ACGTTTCTTAAACCCGCACC

Downstream 100 bases:

>100_bases
TGAAGAAGAATTCTTATCTTTTAAGCTGCCTGGCCATTGCCGTCTCCAGTGCCTGTCATGCTGAAGTATTAACCTACCCG
GATCCGCTGGGTTCGTCGCA

Product: group 4 capsule (G4C) polysaccharide, YmcB

Products: NA

Alternate protein names: Group 4 capsule protein C homolog

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD

Sequences:

>Translated_248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD
>Mature_248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbG

Homologues:

Organism=Escherichia coli, GI1787220, Length=248, Percent_Identity=100, Blast_Score=503, Evalue=1e-144,
Organism=Escherichia coli, GI1790460, Length=244, Percent_Identity=42.2131147540984, Blast_Score=187, Evalue=6e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GFCC_ECOLI (P75883)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   G64839
- RefSeq:   AP_001614.1
- RefSeq:   NP_415505.1
- ProteinModelPortal:   P75883
- DIP:   DIP-12708N
- MINT:   MINT-1302737
- STRING:   P75883
- EnsemblBacteria:   EBESCT00000003717
- EnsemblBacteria:   EBESCT00000018037
- GeneID:   944978
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0968
- KEGG:   eco:b0985
- EchoBASE:   EB3494
- EcoGene:   EG13730
- eggNOG:   NOG10375
- GeneTree:   EBGT00050000009132
- HOGENOM:   HBG416875
- OMA:   FSANNEF
- ProtClustDB:   CLSK879893
- BioCyc:   EcoCyc:G6506-MONOMER
- Genevestigator:   P75883
- InterPro:   IPR010425

Pfam domain/function: PF06251 DUF1017

EC number: NA

Molecular weight: Translated: 27296; Mature: 27296

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWW
CCHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCEEECCCHHHHHHHHCCCHHHHHCCC
PGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL
CCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
DPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL
CCCEEEECCCCCCCEEECEEEEEECCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHCCCC
AGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
CCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHCCHHHHHHH
VLTQRVPD
HHHHHCCC
>Mature Secondary Structure
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWW
CCHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCEEECCCHHHHHHHHCCCHHHHHCCC
PGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL
CCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
DPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL
CCCEEEECCCCCCCEEECEEEEEECCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHCCCC
AGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
CCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHCCHHHHHHH
VLTQRVPD
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503