Definition | Escherichia coli HS, complete genome. |
---|---|
Accession | NC_009800 |
Length | 4,643,538 |
Click here to switch to the map view.
The map label for this gene is ybjS [H]
Identifier: 157160391
GI number: 157160391
Start: 965975
End: 967024
Strand: Reverse
Name: ybjS [H]
Synonym: EcHS_A0972
Alternate gene names: 157160391
Gene position: 967024-965975 (Counterclockwise)
Preceding gene: 157160392
Following gene: 157160388
Centisome position: 20.83
GC content: 54.0
Gene sequence:
>1050_bases ATGCGCACGTCATTTTCTCAACAACAGTGGATTGATATGAAGGTACTGGTTACCGGCGCCACCAGCGGCTTAGGTCGAAA CGCGGTAGAGTTTTTATGCCAGAAAGGCATCAGCGTGCGAGCGACCGGTCGCAACGAGGCAATGGGCAAATTGCTGGAAA AAATGGGCGCAGAGTTTGTTCCGGCGGATCTGACCGAGCTGGTTTCATCACAAGCTAAAGTGATGCTCGCGGGCATTGAT ACGCTGTGGCACTGCTCCAGCTTTACCTCACCCTGGGGGACACAACAGGCTTTCGATCTGGCTAACGTTCGCGCCACTCG CCGCCTGGGTGAATGGGCTGTCGCCTGGGGTGTGCGTAACTTTATTCATATCTCTTCCCCCTCCCTGTACTTCGATTATC ACCACCATCGCGATATTAAAGAAGATTTTCGCCCTCACCGCTTCGCCAACGAGTTTGCCCGCAGCAAAGCAGCCAGCGAA GAAGTGATCAATATGCTTTCGCAGGCGAATCCACAAACGCGCTTTACTATTCTGCGCCCACAAAGTCTGTTCGGACCGCA CGATAAAGTCTTTATTCCCCGTCTGGCGCATATGATGCACCACTACGGCAGTATTCTGTTACCGCATGGCGGCAGTGCGC TGGTCGATATGACCTACTATGAAAATGCCGTGCACGCAATGTGGCTGGCAAGCCAGGAAGCCTGCGATAAGCTACCTTCC GGGCGTGTGTACAACATCACCAACGGCGAGCATCGCACACTGCGCAGCATCGTGCAGAAGCTGATCGACGAGTTGAATAT TGACTGTCGTATTCGTTCCGTCCCCTACCCGATGCTGGATATGATCGCCCGCAGCATGGAGCGTTTAGGCCGCAAGTCAG CAAAAGAGCCGCCGCTGACCCACTACGGCGTCTCCAAGTTGAATTTTGACTTTACGCTGGATATTACGCGTGCGCAGGAA GAGTTAGGTTATCAGCCGGTCATCACCCTGGATGAAGGTATCGAGAAAACTGCCGCCTGGCTACGCGACCACGGAAAACT GCCGCGCTAA
Upstream 100 bases:
>100_bases AACAAATCGCCAGACTGGCAGAACAAAGCACAGATTAATCGACAAAACCTGCGTTATTCTTTCATGTTTCCCATTGCATC ATGGGGGAAATCACGGAAGA
Downstream 100 bases:
>100_bases TCCTGCCCGTATTTCTCCAGCAATGCTTCGGCAATCGCCTGAGTTTCTGCATCCGCTTCGCCGTTATATAACGTCGGGCG GAAATGCATCTGGAATGCCA
Product: NAD-dependent epimerase/dehydratase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE ELGYQPVITLDEGIEKTAAWLRDHGKLPR
Sequences:
>Translated_349_residues MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE ELGYQPVITLDEGIEKTAAWLRDHGKLPR >Mature_349_residues MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE ELGYQPVITLDEGIEKTAAWLRDHGKLPR
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI193211614, Length=338, Percent_Identity=23.9644970414201, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI8393516, Length=338, Percent_Identity=23.9644970414201, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI239745448, Length=332, Percent_Identity=24.3975903614458, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI310132178, Length=332, Percent_Identity=24.3975903614458, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI310113012, Length=332, Percent_Identity=24.3975903614458, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI87081792, Length=337, Percent_Identity=100, Blast_Score=707, Evalue=0.0, Organism=Caenorhabditis elegans, GI17570557, Length=233, Percent_Identity=27.4678111587983, Blast_Score=75, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6321437, Length=294, Percent_Identity=25.5102040816327, Blast_Score=84, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR016040 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: NA
Molecular weight: Translated: 39595; Mature: 39595
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFV CCCCCCCHHCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCC PADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRN CHHHHHHHHHHHEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRP EEEECCCCEEEECHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC QSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS HHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCC GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLT CCEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC HYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR CCCHHHCCCEEEEEEEHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFV CCCCCCCHHCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCC PADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRN CHHHHHHHHHHHEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRP EEEECCCCEEEECHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC QSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS HHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCC GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLT CCEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC HYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR CCCHHHCCCEEEEEEEHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]