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The map label for this gene is ybgD [H]

Identifier: 157160199

GI number: 157160199

Start: 778315

End: 778881

Strand: Reverse

Name: ybgD [H]

Synonym: EcHS_A0767

Alternate gene names: 157160199

Gene position: 778881-778315 (Counterclockwise)

Preceding gene: 157160200

Following gene: 157160198

Centisome position: 16.77

GC content: 47.8

Gene sequence:

>567_bases
ATGTTTAAAGGACAAAAAACATTGGCCGCACTGGCCGTATCTCTGCTGTTCACAGCACCTGTTTATGCGGCTGATGAAGG
ATCCGGTGAAATTCACTTTAAAGGTGAAGTTATTGAAGCACCGTGTGAAATACATCAGGATGATATTGATAAAGAGGTTG
AACTCGGTCAGGTGACCACCAGCCACATTAATCAGTCACATCACAGCGATGCCGTTGCTGTCGACCTGCGCTTAGTCAAC
TGTGATCTGGAAAACTCCAGCAACGGTTCCGGTGGCAAGATTTCTAAAGTTGCAGTCACCTTTGATAGCTCAGCGAAAAC
CACCGGCGCAGATCCGATTCTCAACAACACCAGCACGGGTGAAGCCACCGGCGTCGGCGTACGTTTAATGAATAAAGATC
AAAGCAATATCGTTTTAGGCACCGCTACTCCAGATATCGACCTGGCTCCGACCTCCAGCGAACAAACGCTGAATTTCTTT
GCCTGGATGGAACAAATTGATCAGGCTACACCTGTAACGCCAGGCGCAGTTACGGCGAATGCAACCTACGTGCTGGATTA
TAAATAA

Upstream 100 bases:

>100_bases
AAGATTTTTAATATTGTTAAATAAAACCAAATACATTCAACTGCCAGTTAATATATTCTTGCCACGCAACATTCTATCTC
ATTATTTAAAGGACTCCGTT

Downstream 100 bases:

>100_bases
GTATTACTTTGGCGGCGCTATCGCCGCCTTTCATAAAATATTTATCAGGTATGGACACCGTGAATATTTATCGACTCTCT
TTTGTATCCTGCCTGGTCGT

Product: putative type 1 fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLRLVN
CDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFF
AWMEQIDQATPVTPGAVTANATYVLDYK

Sequences:

>Translated_188_residues
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLRLVN
CDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFF
AWMEQIDQATPVTPGAVTANATYVLDYK
>Mature_188_residues
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLRLVN
CDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFF
AWMEQIDQATPVTPGAVTANATYVLDYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=188, Percent_Identity=79.2553191489362, Blast_Score=311, Evalue=2e-86,
Organism=Escherichia coli, GI1789422, Length=187, Percent_Identity=37.4331550802139, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1790769, Length=133, Percent_Identity=34.5864661654135, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1786746, Length=188, Percent_Identity=27.6595744680851, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 19854; Mature: 19854

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTT
CCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEEECEEEECCCCCCCCCCCCCEEECEEEH
SHINQSHHSDAVAVDLRLVNCDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTG
HHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
EATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTAN
CCCEEEEEEECCCCCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEECC
ATYVLDYK
EEEEEEEC
>Mature Secondary Structure
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTT
CCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEEECEEEECCCCCCCCCCCCCEEECEEEH
SHINQSHHSDAVAVDLRLVNCDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTG
HHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
EATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTAN
CCCEEEEEEECCCCCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEECC
ATYVLDYK
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]