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The map label for this gene is ybgK

Identifier: 157160192

GI number: 157160192

Start: 770323

End: 771255

Strand: Direct

Name: ybgK

Synonym: EcHS_A0760

Alternate gene names: 157160192

Gene position: 770323-771255 (Clockwise)

Preceding gene: 157160191

Following gene: 157160193

Centisome position: 16.59

GC content: 55.73

Gene sequence:

>933_bases
ATGCTGAAGATTATTCGTGCGGGCATGTATACCACTGTGCAGGATGGCGGTCGTCACGGTTTTCGCCAGTCGGGTATCAG
CCACTGCGGCGCACTGGATATGCCCGCGTTACGCATTGCTAACCTACTGGTGGGTAATGACGCCAATGCCCCCGCGCTGG
AGATCACGCTCGGTCAGTTAACTGTTGAGTTCGAAACTGATGGGTGGTTTGCTCTGACGGGTGCCGGTTGCGAAGCGCGG
CTGGATGATAATGCCGTCTGGACCGGCTGGCGATTGCCGATGAAAGCAGGCCAGCGTTTAACGCTTAAACGCCCGCAGCA
CGGGATGCGCAGTTATCTGGCGGTCGCGGGTGGTATTGATGTTCCGCCGGTAATGGGCTCATGCAGCACCGATCTCAAAG
TGGGGATTGGCGGGCTGGAAGGCCGTTTACTGAAGGATGGTGACCGACTCCCGATTGGCAAATCGAAGCGTGATTCTATG
GAAGCGCAGGGCGTTAAACAGCTGCTGTGGGGCAACCGCATTCGCGCCTTGCCGGGGCCGGAATATCATGAGTTCGATCG
CGCCTCGCAGGATGCATTCTGGCGTTCGCCCTGGCAGCTTAGCTCGCAAAGTAACCGCATGGGCTATCGCTTACAGGGGC
AAATTTTAAAACGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCACATAACGGG
CAGCCGATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTGCCTGTATCATTGAGGCTGATATGTA
CCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTGAAAGCGCGGCAAG
ATCAGCAACGTTATTTTGAACAATTAGCGTGGCGGCTGCACAATGAAAATTGA

Upstream 100 bases:

>100_bases
TTGGTCATACCTCACTCAGCCTGTTTGATCCGGCGCGTGACGAACCCATCTTATTACGTCCGGGAGACAGCGTGCGCTTT
GTACCACAGAAGGAGGGAGT

Downstream 100 bases:

>100_bases
CCTGAATGCCGATCTGGGCGAAGGCTGCGCCAGCGACGCAGAGCTATTAACGCTGGTTTCCTCTGCCAATATTGCTTGTG
GATTTCATGCAGGCGATGCC

Product: allophanate hydrolase, subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEAR
LDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSM
EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN

Sequences:

>Translated_310_residues
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEAR
LDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSM
EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN
>Mature_310_residues
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEAR
LDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSM
EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2)

Homologues:

Organism=Escherichia coli, GI1786930, Length=310, Percent_Identity=100, Blast_Score=640, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319685, Length=322, Percent_Identity=29.1925465838509, Blast_Score=125, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBGK_ECOLI (P75745)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   G64806
- RefSeq:   AP_001350.1
- RefSeq:   NP_415240.1
- ProteinModelPortal:   P75745
- SMR:   P75745
- DIP:   DIP-11397N
- STRING:   P75745
- EnsemblBacteria:   EBESCT00000003191
- EnsemblBacteria:   EBESCT00000003192
- EnsemblBacteria:   EBESCT00000017094
- GeneID:   945317
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0702
- KEGG:   eco:b0712
- EchoBASE:   EB3091
- EcoGene:   EG13307
- eggNOG:   COG1984
- GeneTree:   EBGT00050000010897
- HOGENOM:   HBG534145
- OMA:   YSWWSLP
- ProtClustDB:   CLSK879731
- BioCyc:   EcoCyc:G6381-MONOMER
- Genevestigator:   P75745
- InterPro:   IPR003778
- SMART:   SM00797
- TIGRFAMs:   TIGR00724

Pfam domain/function: PF02626 AHS2

EC number: NA

Molecular weight: Translated: 34387; Mature: 34387

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQL
CCEEEECCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE
TVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGID
EEEEECCCEEEEECCCCEEEECCCEEEEEEECCHHCCCEEEECCCHHHHHHHHHHHCCCC
VPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGP
CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCC
EYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
CHHHHCCCCCCHHCCCCCCCCCCCCCCCEEEECHHHHHCHHHHHHHCCCCCCEEECCCCC
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFE
CCEEEECCCCCCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QLAWRLHNEN
HHHHHHCCCC
>Mature Secondary Structure
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQL
CCEEEECCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE
TVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGID
EEEEECCCEEEEECCCCEEEECCCEEEEEEECCHHCCCEEEECCCHHHHHHHHHHHCCCC
VPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGP
CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCC
EYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
CHHHHCCCCCCHHCCCCCCCCCCCCCCCEEEECHHHHHCHHHHHHHCCCCCCEEECCCCC
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFE
CCEEEECCCCCCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QLAWRLHNEN
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503