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The map label for this gene is ybgJ

Identifier: 157160191

GI number: 157160191

Start: 769673

End: 770329

Strand: Direct

Name: ybgJ

Synonym: EcHS_A0759

Alternate gene names: 157160191

Gene position: 769673-770329 (Clockwise)

Preceding gene: 157160190

Following gene: 157160192

Centisome position: 16.58

GC content: 57.69

Gene sequence:

>657_bases
GTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCA
GAAACGGATCTGGCGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCA
CGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCTGGTGGGAGGAGAGCGAGGCG
CTGGAGCCGGAGTCTCGCTTTATTGAAATTCCGGTGGTTTACGGTGGTGCAGGCGGACCGGATTTGGCGGTGGTCGCGGC
GCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAAC
CGGGCTTCCCGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTACTCGTTCCGGCA
GGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCGGGTGGCTGGCAGTTGATTGGTCATAC
CTCACTCAGCCTGTTTGATCCGGCGCGTGACGAACCCATCTTATTACGTCCGGGAGACAGCGTGCGCTTTGTACCACAGA
AGGAGGGAGTATGCTGA

Upstream 100 bases:

>100_bases
ATTCGCGCATTGAGCGAGTGGCTGAATGAAAATACCGATCTTGATGTGACCTTTATTGATATTCCTAATCCTGCATAACG
AATAATCAGAGGGATCGAAA

Downstream 100 bases:

>100_bases
AGATTATTCGTGCGGGCATGTATACCACTGTGCAGGATGGCGGTCGTCACGGTTTTCGCCAGTCGGGTATCAGCCACTGC
GGCGCACTGGATATGCCCGC

Product: allophanate hydrolase, subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC

Sequences:

>Translated_218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
>Mature_218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2)

Homologues:

Organism=Escherichia coli, GI1786929, Length=218, Percent_Identity=100, Blast_Score=437, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBGJ_ECO57 (P0AAV5)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   F85571
- PIR:   H90720
- RefSeq:   NP_286426.1
- RefSeq:   NP_308763.1
- ProteinModelPortal:   P0AAV5
- SMR:   P0AAV5
- EnsemblBacteria:   EBESCT00000025028
- EnsemblBacteria:   EBESCT00000057435
- GeneID:   917105
- GeneID:   957802
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0862
- KEGG:   ecs:ECs0736
- GeneTree:   EBGT00050000009382
- HOGENOM:   HBG482819
- OMA:   QPGFAYM
- ProtClustDB:   CLSK879730
- BioCyc:   ECOL83334:ECS0736-MONOMER
- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130
- Gene3D:   G3DSA:3.30.1360.40
- Gene3D:   G3DSA:2.40.100.10
- SMART:   SM00796
- TIGRFAMs:   TIGR00370

Pfam domain/function: PF02682 AHS1

EC number: NA

Molecular weight: Translated: 23947; Mature: 23947

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP
CCCCEEEEEECEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEECC
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELH
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGG
HCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
WQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
EEEEECCEEEEECCCCCCCEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP
CCCCEEEEEECEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEECC
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELH
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGG
HCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
WQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
EEEEECCEEEEECCCCCCCEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796