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The map label for this gene is ybdO

Identifier: 157160100

GI number: 157160100

Start: 672797

End: 673699

Strand: Reverse

Name: ybdO

Synonym: EcHS_A0655

Alternate gene names: 157160100

Gene position: 673699-672797 (Counterclockwise)

Preceding gene: 157160101

Following gene: 157160099

Centisome position: 14.51

GC content: 38.65

Gene sequence:

>903_bases
ATGGCCAATCTCTACGACTTGAAAAAGTTCGACTTAAATCTTCTTGTCATATTTGAGTGTATTTACCAGCATTTAAGCAT
TAGCAAAGCTGCTGAATCACTATATATCACCCCATCAGCCGTGAGCCAGTCGTTACAACGCTTACGTGCGCAATTTAATG
ACCCTTTATTCATTCGCTCAGGAAAAGGTATCGCGCCGACGACAACAGGGTTAAATCTGCATCACCATCTTGAGAAAAAT
CTCAGAGGCCTTGAACAAACAATTAATATAGTCAATAAGTCCGAACTAAAGAAAAACTTTATTATCTACGGCCCTCAGCT
CATTTCTTGCTCTAATAATAGTATGCTGATCCGCTGCCTACGGCAAGATTCCTCTGTCGAGATTGAGTGCCATGATATCC
TCATGTCAGCAGAGAATGCTGAAGAACTGTTGGTTCACCGCAAAGCCGATCTGGTGATCACCCAAATGCCAGTGATCAGC
CGTTCCGTCATTTGCATGCCATTGCATACGATTCGCAATACTCTAATTTGTAGTAATAGGCATCCACGAATTACTGACAA
TAGCACTTATGAACAAATTATGGCAGAAGAGTTCACCCAATTAATATCTAAATCAGCAGGGGTTGATGATATTCAAATGG
AAATAGACGAGAGATTTATGAATCGCAAAATCTCATTTCGTGGTTCCTCTTTGCTGACAATCATTAATAGCATTGCAGTT
ACAGATTTACTGGGAATAGTCCCCTATGAACTTTATAATTCCTACCGTGACTTTCTTAACTTAAAAGAGATAAAACTAGA
ACATCCGTTACCTTCAATAAAGCTTTACATTTCCTATAATAAATCTTCTTTAAATAATTTGGTGTTCTCCCGATTTATTG
ACCGTCTAAATGAGAGTTTTTGA

Upstream 100 bases:

>100_bases
TCCTGAGTTAAGCAAAAAAACATAATCAATAAAAATATATACGCAAAAAACATTGATTAAGTGAATATATCATGGAAGAA
AAATATAACCGGAGTAGTGT

Downstream 100 bases:

>100_bases
TATATAACTACAGACAGCTACTATAACTTTCATCTATTTATTCACAGCGCGAATGAAAAATAAAACACTCTGCTTTACAG
TGTTTACTTTATAATTAACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKN
LRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVIS
RSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
TDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF

Sequences:

>Translated_300_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKN
LRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVIS
RSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
TDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
>Mature_299_residues
ANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNL
RGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISR
SVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVT
DLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786820, Length=300, Percent_Identity=100, Blast_Score=611, Evalue=1e-176,
Organism=Escherichia coli, GI87081766, Length=299, Percent_Identity=30.1003344481605, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87081684, Length=286, Percent_Identity=24.4755244755245, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YBDO_ECOLI (P77746)

Other databases:

- EMBL:   U82598
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   A64794
- RefSeq:   AP_001251.1
- RefSeq:   NP_415136.1
- ProteinModelPortal:   P77746
- IntAct:   P77746
- STRING:   P77746
- EnsemblBacteria:   EBESCT00000003939
- EnsemblBacteria:   EBESCT00000017705
- GeneID:   945216
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0596
- KEGG:   eco:b0603
- EchoBASE:   EB3305
- EcoGene:   EG13534
- eggNOG:   COG0583
- GeneTree:   EBGT00050000008343
- HOGENOM:   HBG416500
- OMA:   SLITIAN
- ProtClustDB:   CLSK879708
- BioCyc:   EcoCyc:G6332-MONOMER
- Genevestigator:   P77746
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 34397; Mature: 34266

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRS
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCCCEEEEEE
RQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNR
CCCCCCEEEHHHHHHCCCCHHHHHHHHHCCEEEEECCHHHHHHHEEEHHHHHHHEEECCC
HPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCCCHHHHHHHHHHH
TDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
HHHHHHHHHHHHHHHHHHHCHHHHEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRS
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCCCEEEEEE
RQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNR
CCCCCCEEEHHHHHHCCCCHHHHHHHHHCCEEEEECCHHHHHHHEEEHHHHHHHEEECCC
HPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCCCHHHHHHHHHHH
TDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
HHHHHHHHHHHHHHHHHHHCHHHHEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503