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The map label for this gene is rzpD [H]

Identifier: 157159759

GI number: 157159759

Start: 309952

End: 310389

Strand: Direct

Name: rzpD [H]

Synonym: EcHS_A0305

Alternate gene names: 157159759

Gene position: 309952-310389 (Clockwise)

Preceding gene: 157159758

Following gene: 157159760

Centisome position: 6.67

GC content: 49.77

Gene sequence:

>438_bases
ATGAGCAGATTAACCGCGATTATCTCCGCTCTGATTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTAATCATTACCG
TGATAACGCCATCGCCTACAAAGACCAGCGCGATAAAGCCACATCCATCATCGCTGATATGCAGAAGCGTCAACGTGATG
TAGCAGAACTCGACGCAAGATATACAAAGGAACTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCT
GCTGGGCGTAAGCGCCTGCAAGTCGCCGCCACCTGTGCAAAGTCAACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAG
CCCAAGACTTACAGCAGATGCTGAACTCAATTATTACCGTCTCCGAAGTGGAATCGACAGGATAACCGCGCAGGTTAACT
ACCTGCAGGAATACATCAGGACGCAATGCCTGAAATAA

Upstream 100 bases:

>100_bases
CTTCACTGCCGGGCGCTGGTTATGGTCAGTTCGAGCATAAAGTTGACAGCCTGATTGCAAAATTCAAAGAGGCTGGCGGA
ACGGTCAGAGAGATTGAGGT

Downstream 100 bases:

>100_bases
TTTTTTTGCAAATCACAAAGTCCATTTAATGAGCCTCGCGGTGCGGGGCTTTTTTATATCTGAGTTTCACAGCGCATCTC
ACGCGCATATTAACGAGAGC

Product: bacteriophage lysis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MSRLTAIISALIICIIVCLSWAVNHYRDNAIAYKDQRDKATSIIADMQKRQRDVAELDARYTKELADANATIESLRADVS
AGRKRLQVAATCAKSTTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLK

Sequences:

>Translated_145_residues
MSRLTAIISALIICIIVCLSWAVNHYRDNAIAYKDQRDKATSIIADMQKRQRDVAELDARYTKELADANATIESLRADVS
AGRKRLQVAATCAKSTTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLK
>Mature_144_residues
SRLTAIISALIICIIVCLSWAVNHYRDNAIAYKDQRDKATSIIADMQKRQRDVAELDARYTKELADANATIESLRADVSA
GRKRLQVAATCAKSTTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLK

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=152, Percent_Identity=57.8947368421053, Blast_Score=138, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 16150; Mature: 16018

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLTAIISALIICIIVCLSWAVNHYRDNAIAYKDQRDKATSIIADMQKRQRDVAELDAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YTKELADANATIESLRADVSAGRKRLQVAATCAKSTTGASSMGDGESPRLTADAELNYYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHH
LRSGIDRITAQVNYLQEYIRTQCLK
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRLTAIISALIICIIVCLSWAVNHYRDNAIAYKDQRDKATSIIADMQKRQRDVAELDAR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YTKELADANATIESLRADVSAGRKRLQVAATCAKSTTGASSMGDGESPRLTADAELNYYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHH
LRSGIDRITAQVNYLQEYIRTQCLK
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]