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The map label for this gene is tcaR

Identifier: 156980672

GI number: 156980672

Start: 2484347

End: 2484802

Strand: Reverse

Name: tcaR

Synonym: SAHV_2341

Alternate gene names: 156980672

Gene position: 2484802-2484347 (Counterclockwise)

Preceding gene: 156980674

Following gene: 156980671

Centisome position: 86.27

GC content: 28.73

Gene sequence:

>456_bases
ATGGTAAAACATTTACAAGACCATATTCAATTTTTAGAGCAGTTTATAAATAACGTTAACGCATTAACTGCAAAAATGTT
GAAAGATTTACAAAATGAATATGAAATTTCATTAGAGCAGTCTAACGTATTAGGTATGTTAAATAAAGAACCTTTGACAA
TTAGTGAAATCACGCAAAGACAAGGAGTAAATAAGGCCGCAGTAAGCCGACGAATTAAAAAGTTAATCGATGCTAAATTA
GTTAAGTTAGATAAACCAAATTTAAATATTGATCAACGTTTGAAATTCATAACCTTAACTGACAAAGGTAGAGCATATTT
GAAAGAACGTAATGCGATTATGACAGATATTGCGCAAGATATTACTAATGATTTAAATTCTGAAGATATTGAAAATGTAA
GGCAAGTATTAGAAGTCATCAATCATCGCATTAAAACATATAGCAATCATAAATAG

Upstream 100 bases:

>100_bases
GTTATATTATATATGGGTCAATATTTTTGTGTTTTTTAGATGTGCGATACAATGATTGCTGAGGATACTTTATAAAAATA
GTAATTAGGGAGAAATAATT

Downstream 100 bases:

>100_bases
GTTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTT
TCATAAATAATGTAATAAGG

Product: TcaR transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQRQGVNKAAVSRRIKKLIDAKL
VKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQDITNDLNSEDIENVRQVLEVINHRIKTYSNHK

Sequences:

>Translated_151_residues
MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQRQGVNKAAVSRRIKKLIDAKL
VKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQDITNDLNSEDIENVRQVLEVINHRIKTYSNHK
>Mature_151_residues
MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQRQGVNKAAVSRRIKKLIDAKL
VKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQDITNDLNSEDIENVRQVLEVINHRIKTYSNHK

Specific function: Is a weak negative regulator of transcription of the icaABD operon

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TCAR_STAAC (Q9F4G3)

Other databases:

- EMBL:   AY008833
- EMBL:   CP000046
- PIR:   H90035
- RefSeq:   YP_187159.1
- ProteinModelPortal:   Q9F4G3
- STRING:   Q9F4G3
- EnsemblBacteria:   EBSTAT00000009235
- GeneID:   3236068
- GenomeReviews:   CP000046_GR
- KEGG:   sac:SACOL2353
- TIGR:   SACOL2353
- eggNOG:   COG1846
- GeneTree:   EBGT00050000023988
- HOGENOM:   HBG693967
- OMA:   DQRLKYV
- ProtClustDB:   CLSK885922
- BioCyc:   SAUR93062:SACOL2353-MONOMER
- GO:   GO:0005622
- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00347

Pfam domain/function: PF01022 HTH_5

EC number: NA

Molecular weight: Translated: 17522; Mature: 17522

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
QGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHHHHH
ITNDLNSEDIENVRQVLEVINHRIKTYSNHK
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
QGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHHHHH
ITNDLNSEDIENVRQVLEVINHRIKTYSNHK
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA