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The map label for this gene is yocS [H]

Identifier: 156980636

GI number: 156980636

Start: 2446088

End: 2447005

Strand: Reverse

Name: yocS [H]

Synonym: SAHV_2305

Alternate gene names: 156980636

Gene position: 2447005-2446088 (Counterclockwise)

Preceding gene: 156980638

Following gene: 156980635

Centisome position: 84.96

GC content: 34.31

Gene sequence:

>918_bases
ATGTTTCAAAAATTGAGTATATTTGCCACGAAGAGTTTTTTGGTATGGATGTTAGTAGCAGCTGTTATTGGATTTATTTT
CCCACAACATGTTGCGACATTAGGTAAGTGGGTACCTTATTTACTTGGTATTGTTATGTTAGGTATGGGATTAACAATTA
CACCTAATGATTTCAAAATGGTCTTTAAAGCACCTAGAGCAGTAATTATTGGTGTCTGTCTACAATTCAGTATTATGCCC
ACATTAGCATTTATAATTGCAAAGTCTTTTCATTTACCACCTGATATTGCTGTTGGCGTAATATTAGTTGGATGTTGTCC
GGGTGGGACATCAAGTAATGTAATGAGTTATTTAGCCAAAGCTAACGTAGCACTTTCTGTTTCTATTACGACGGTCTCTA
CGTTGCTAGCGCCATTCGTTACACCTGCGTTAATATATCTATTTGCAAATGAATGGTTGGAAGTATCTTTCCTGAGTATG
TTGTGGTCAGTTGTTCAAGTTGTATTAATTCCAATTGCTTTAGGTATTGTTTTGCAAATTATTAATCGTAAAATTGCTGA
AAAAGCTTCTACAGCTTTGCCGATTATATCAGTTGTTGCTATTTCATTAATTTTAGCAATAGTTGTAGGTGGCAGTAAGC
ACCAAATCTTAACTACAGGATTATTAATATTTTTAGTAGTTATTTTACATAACGTATTAGGGTATACGATTGGATATTGG
TTAGCTCGTCTTTTAAAATTAGATCGACAAGATCAAAAAGCAGTCAGTATTGAAGTTGGAATGCAGAACTCTGGTTTAGC
TGTGTCATTAGCAGCATTGCATTTTAATCCAATTGCAGCAGTACCAGGCGCAGTGTTTAGTTTCATTCATAATATAACAG
GGCCTATTTTAGCAAAGTATTGGTCAAAAAAGTTATAA

Upstream 100 bases:

>100_bases
AAGAGAATGGCTAAATAATCTTAATTTTCAGAAAAGTAATTGTAACCTTACTGGTCTTATGGTAATATTTTTCAATATTA
TCGACGAGGATGTGTTAACA

Downstream 100 bases:

>100_bases
TTGCACTAATAGAATGAAGTGGTCATCGGACTATGTTAAGCTTTGATAAAGAGAAAAAATAGAGGAGTAAATATATGTAT
AGAGCAGTTATATTTGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKMVFKAPRAVIIGVCLQFSIMP
TLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAKANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFLSM
LWSVVQVVLIPIALGIVLQIINRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKYWSKKL

Sequences:

>Translated_305_residues
MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKMVFKAPRAVIIGVCLQFSIMP
TLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAKANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFLSM
LWSVVQVVLIPIALGIVLQIINRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKYWSKKL
>Mature_305_residues
MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKMVFKAPRAVIIGVCLQFSIMP
TLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAKANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFLSM
LWSVVQVVLIPIALGIVLQIINRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKYWSKKL

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=246, Percent_Identity=34.5528455284553, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI4506971, Length=258, Percent_Identity=30.6201550387597, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI37537552, Length=242, Percent_Identity=26.0330578512397, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI24308414, Length=244, Percent_Identity=30.327868852459, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI215422370, Length=245, Percent_Identity=31.4285714285714, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI9790143, Length=245, Percent_Identity=31.4285714285714, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI215422368, Length=245, Percent_Identity=31.4285714285714, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI58219066, Length=237, Percent_Identity=31.6455696202532, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32866; Mature: 32866

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCC
>Mature Secondary Structure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HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]