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The map label for this gene is 156937851

Identifier: 156937851

GI number: 156937851

Start: 945702

End: 946442

Strand: Direct

Name: 156937851

Synonym: Igni_1062

Alternate gene names: NA

Gene position: 945702-946442 (Clockwise)

Preceding gene: 156937850

Following gene: 156937856

Centisome position: 72.88

GC content: 57.76

Gene sequence:

>741_bases
TTGTCTCCCGTTCCCCCCTACGGCACAGAGCGAAGGGAGATGCTGAGGGTATACGCGGACGAGAGGGAGAGGAGGAGCGG
GGTCCCGGAGATACTGGCGAAGAAGTACGGCGTGATAGTCACTTTCAAGAACATGCCGGTGGCGGATTATGCGGTCTCCG
ACAGGGTGGGGATAGAGAGGAAGAGCGTGAGCGACTTCCTCAAGAGCTTGGCGGACGGGAGGCTCTTCAACCAAGCGAGG
AGGCTCAAGGAGGTTTACCAGAAACCCTTCATAATTGTGGAGGGGAAGTGGGACTGGGTGGAGAAGGCAGAGAGGACCTC
CAAGGCTGCCTCCCCCGCTCTGGCCTCCTTGGTCTACGACTTCGGTATAGGGATAATTTACACCCTTACGAAGGAGGACA
CTGCGAGGGTGATCAAGTTCTTGGCCGAGAGGGAGCAAGGGGAGAACAAGAGGAGGGTCCCAGTAAAGCTCCAAGGGAAG
CCCCCGATAGGGGACGTGAGGCAGTGGCAGCTGTTCTTGGTCCAGTGCCTCCCCGGGGTGGGTCCCAAGCTTGCGGAAAA
GCTCTTGGAGAGGTTCGGGAGCGTGAGGGCGGTCTTCAACGCCTCAGTGGCGGAGCTGAGCAAGGTGGAAGGCTTGGGGA
CCAACAAGGCCCAAGAGATAGTTAAGGTGCTGACCGCCCCCTGGAAGATAAGGAAGGACAAGGAAGGCCTAGAAAAGTTC
ATTAAGAAAGAGGACTCTTAG

Upstream 100 bases:

>100_bases
TGGACTTGTTGCTCAAGGCGGCCCGATGAGGTCCACGCCCTTCGCCGACGCGGGTGAGGACTCTTCCTCCCGAAACTGAG
GGTCCAGCCCCAACCCCTTT

Downstream 100 bases:

>100_bases
GAGCGCTTGTAGAGCCTAACGAACCTCTTCACGAACTTGTCCCACTGCTCCCCCTGTTTGAGCTCCCTCTCCACCAAGTC
CTTGAACTCCGCGGCCCTCT

Product: ERCC4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSPVPPYGTERREMLRVYADERERRSGVPEILAKKYGVIVTFKNMPVADYAVSDRVGIERKSVSDFLKSLADGRLFNQAR
RLKEVYQKPFIIVEGKWDWVEKAERTSKAASPALASLVYDFGIGIIYTLTKEDTARVIKFLAEREQGENKRRVPVKLQGK
PPIGDVRQWQLFLVQCLPGVGPKLAEKLLERFGSVRAVFNASVAELSKVEGLGTNKAQEIVKVLTAPWKIRKDKEGLEKF
IKKEDS

Sequences:

>Translated_246_residues
MSPVPPYGTERREMLRVYADERERRSGVPEILAKKYGVIVTFKNMPVADYAVSDRVGIERKSVSDFLKSLADGRLFNQAR
RLKEVYQKPFIIVEGKWDWVEKAERTSKAASPALASLVYDFGIGIIYTLTKEDTARVIKFLAEREQGENKRRVPVKLQGK
PPIGDVRQWQLFLVQCLPGVGPKLAEKLLERFGSVRAVFNASVAELSKVEGLGTNKAQEIVKVLTAPWKIRKDKEGLEKF
IKKEDS
>Mature_245_residues
SPVPPYGTERREMLRVYADERERRSGVPEILAKKYGVIVTFKNMPVADYAVSDRVGIERKSVSDFLKSLADGRLFNQARR
LKEVYQKPFIIVEGKWDWVEKAERTSKAASPALASLVYDFGIGIIYTLTKEDTARVIKFLAEREQGENKRRVPVKLQGKP
PIGDVRQWQLFLVQCLPGVGPKLAEKLLERFGSVRAVFNASVAELSKVEGLGTNKAQEIVKVLTAPWKIRKDKEGLEKFI
KKEDS

Specific function: Unknown

COG id: COG1948

COG function: function code L; ERCC4-type nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR020819
- InterPro:   IPR006166
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR011335
- InterPro:   IPR010994 [H]

Pfam domain/function: PF00270 DEAD; PF02732 ERCC4; PF00271 Helicase_C; PF00633 HHH [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 27882; Mature: 27751

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPVPPYGTERREMLRVYADERERRSGVPEILAKKYGVIVTFKNMPVADYAVSDRVGIER
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCH
KSVSDFLKSLADGRLFNQARRLKEVYQKPFIIVEGKWDWVEKAERTSKAASPALASLVYD
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
FGIGIIYTLTKEDTARVIKFLAEREQGENKRRVPVKLQGKPPIGDVRQWQLFLVQCLPGV
HCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCC
GPKLAEKLLERFGSVRAVFNASVAELSKVEGLGTNKAQEIVKVLTAPWKIRKDKEGLEKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
IKKEDS
HHCCCC
>Mature Secondary Structure 
SPVPPYGTERREMLRVYADERERRSGVPEILAKKYGVIVTFKNMPVADYAVSDRVGIER
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCH
KSVSDFLKSLADGRLFNQARRLKEVYQKPFIIVEGKWDWVEKAERTSKAASPALASLVYD
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
FGIGIIYTLTKEDTARVIKFLAEREQGENKRRVPVKLQGKPPIGDVRQWQLFLVQCLPGV
HCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCC
GPKLAEKLLERFGSVRAVFNASVAELSKVEGLGTNKAQEIVKVLTAPWKIRKDKEGLEKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
IKKEDS
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]