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The map label for this gene is arnC [H]

Identifier: 156937234

GI number: 156937234

Start: 390674

End: 391771

Strand: Reverse

Name: arnC [H]

Synonym: Igni_0440

Alternate gene names: 156937234

Gene position: 391771-390674 (Counterclockwise)

Preceding gene: 156937235

Following gene: 156937232

Centisome position: 30.19

GC content: 59.56

Gene sequence:

>1098_bases
TTGGTGGACGTCTCGGTAATTGTGCCGACGTACAACGAGAGGGAGAACTTGCCAGTATTGGCGAAGAGGTTGGACAAGGC
CATGGGTAAGGCCGGGATAAGCTATGAGCTCGTCGTGGTTGACGACAACTCTCCGGACGGCACGGCCGAGGTCGCTAGGA
ACTTGAAGCTGGAGCACGGAAAGGTAAAGGTTGTCGTTAGGAAGGACGAGAGGGGGCTGGCGAGCGCGGTAATGAAGGGC
TTCGAGGTGGCGGAGGGGAAGTACTTCGTAGTCATGGACGCGGACCTACAGCACCCCCCGGAGGTGGTGCCCGAGCTCGT
GAAGAGGCTGAAGGAGGACTGCGACTTAGTGATAGCCTCTAGGTACTCGAAGGAGGGCAGGATAGAGGAGTGGAACTTCG
TTAGGAAGGTCATAAGTAAGGGCGCTACCATCTTGGCGAAGCTGTTAGTGCCGGCCACTAAGTACACCACCGACCCCATG
AGTGGGTTCTTCGCGCTCAAGAGGGAAGTTGTGGAGAGGGCCAAGCTCCCCCTCAACCCCCTCGGGTACAAGATACTCCT
AGAGCTGCTCGCGAAGGGGAGCTTCGAGAAGGTCTGCGAGGTCCCCTACGTCTTCGGCAAGAGGTTGGCAGGCGAGTCCA
AGCTCGGGGGGAGGGTTATGCTCGAATACTTGATACACTTGATGAAGCTGGCGAAGGAGACCGGCGAGCTCAATAGGATG
CTAACGTTCGCCGCCGTGGGCGCGAGCGGGATAGTGGTGAACGAGGGCGCGCTCTACGCGGTCTACGAGCTCTTGGGCGC
CAAGTCCCTGGGCGCCTTAGGCTTGGCCGCTGCGGGCCTCGCGGGCTTCGAGGCCTCCGTGGTTTACAACTTCTTGTTGC
ACGAGAGGGTGACGTTCAAGGACAGGAGGAAGGGATCCGTCGTGAAGAGGTTCCTCCACTACGAGGCGGCCAGCGTCTTG
GGCGCAGCGGCGCAGCTCGCCTTCCTCCTAGGCTTGACCTACGCGGGGGTGCACTACTTGATCTCGAACTTGATAGGCAT
AGTGGTCGGGCTCGGAATTAGGTACTCCTACTCCGCCACCAAGGCTTGGCCAGCTTGA

Upstream 100 bases:

>100_bases
TAACTTGGCCTACGAGAGCGTTACGGCCGTGGTCGTGTGGGCCTTGTCGCTGTACAGGAACTTAAGGCACGGCCTCTTCT
CGGTGCTCGGATGACCGGGG

Downstream 100 bases:

>100_bases
GCAAGCACTCCACCCCCTCCGAGACCTCCTCCAAGTAGCCCGGTAAGACGAGCTCTTGAACCACCATGATTAGGGTAGCT
ATTAGCACGGAGGCCAAGGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MVDVSVIVPTYNERENLPVLAKRLDKAMGKAGISYELVVVDDNSPDGTAEVARNLKLEHGKVKVVVRKDERGLASAVMKG
FEVAEGKYFVVMDADLQHPPEVVPELVKRLKEDCDLVIASRYSKEGRIEEWNFVRKVISKGATILAKLLVPATKYTTDPM
SGFFALKREVVERAKLPLNPLGYKILLELLAKGSFEKVCEVPYVFGKRLAGESKLGGRVMLEYLIHLMKLAKETGELNRM
LTFAAVGASGIVVNEGALYAVYELLGAKSLGALGLAAAGLAGFEASVVYNFLLHERVTFKDRRKGSVVKRFLHYEAASVL
GAAAQLAFLLGLTYAGVHYLISNLIGIVVGLGIRYSYSATKAWPA

Sequences:

>Translated_365_residues
MVDVSVIVPTYNERENLPVLAKRLDKAMGKAGISYELVVVDDNSPDGTAEVARNLKLEHGKVKVVVRKDERGLASAVMKG
FEVAEGKYFVVMDADLQHPPEVVPELVKRLKEDCDLVIASRYSKEGRIEEWNFVRKVISKGATILAKLLVPATKYTTDPM
SGFFALKREVVERAKLPLNPLGYKILLELLAKGSFEKVCEVPYVFGKRLAGESKLGGRVMLEYLIHLMKLAKETGELNRM
LTFAAVGASGIVVNEGALYAVYELLGAKSLGALGLAAAGLAGFEASVVYNFLLHERVTFKDRRKGSVVKRFLHYEAASVL
GAAAQLAFLLGLTYAGVHYLISNLIGIVVGLGIRYSYSATKAWPA
>Mature_365_residues
MVDVSVIVPTYNERENLPVLAKRLDKAMGKAGISYELVVVDDNSPDGTAEVARNLKLEHGKVKVVVRKDERGLASAVMKG
FEVAEGKYFVVMDADLQHPPEVVPELVKRLKEDCDLVIASRYSKEGRIEEWNFVRKVISKGATILAKLLVPATKYTTDPM
SGFFALKREVVERAKLPLNPLGYKILLELLAKGSFEKVCEVPYVFGKRLAGESKLGGRVMLEYLIHLMKLAKETGELNRM
LTFAAVGASGIVVNEGALYAVYELLGAKSLGALGLAAAGLAGFEASVVYNFLLHERVTFKDRRKGSVVKRFLHYEAASVL
GAAAQLAFLLGLTYAGVHYLISNLIGIVVGLGIRYSYSATKAWPA

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=235, Percent_Identity=37.4468085106383, Blast_Score=161, Evalue=1e-39,
Organism=Escherichia coli, GI1788588, Length=213, Percent_Identity=31.4553990610329, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1788692, Length=217, Percent_Identity=28.110599078341, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71999402, Length=231, Percent_Identity=35.9307359307359, Blast_Score=144, Evalue=8e-35,
Organism=Saccharomyces cerevisiae, GI6325441, Length=237, Percent_Identity=43.4599156118143, Blast_Score=176, Evalue=4e-45,
Organism=Drosophila melanogaster, GI24585265, Length=235, Percent_Identity=36.1702127659575, Blast_Score=158, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 39879; Mature: 39879

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDVSVIVPTYNERENLPVLAKRLDKAMGKAGISYELVVVDDNSPDGTAEVARNLKLEHG
CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC
KVKVVVRKDERGLASAVMKGFEVAEGKYFVVMDADLQHPPEVVPELVKRLKEDCDLVIAS
EEEEEEEECCCHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCEEEHH
RYSKEGRIEEWNFVRKVISKGATILAKLLVPATKYTTDPMSGFFALKREVVERAKLPLNP
HCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHCCCCCC
LGYKILLELLAKGSFEKVCEVPYVFGKRLAGESKLGGRVMLEYLIHLMKLAKETGELNRM
CCHHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LTFAAVGASGIVVNEGALYAVYELLGAKSLGALGLAAAGLAGFEASVVYNFLLHERVTFK
HHHHHCCCCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
DRRKGSVVKRFLHYEAASVLGAAAQLAFLLGLTYAGVHYLISNLIGIVVGLGIRYSYSAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
KAWPA
CCCCC
>Mature Secondary Structure
MVDVSVIVPTYNERENLPVLAKRLDKAMGKAGISYELVVVDDNSPDGTAEVARNLKLEHG
CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC
KVKVVVRKDERGLASAVMKGFEVAEGKYFVVMDADLQHPPEVVPELVKRLKEDCDLVIAS
EEEEEEEECCCHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCEEEHH
RYSKEGRIEEWNFVRKVISKGATILAKLLVPATKYTTDPMSGFFALKREVVERAKLPLNP
HCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHCCCCCC
LGYKILLELLAKGSFEKVCEVPYVFGKRLAGESKLGGRVMLEYLIHLMKLAKETGELNRM
CCHHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LTFAAVGASGIVVNEGALYAVYELLGAKSLGALGLAAAGLAGFEASVVYNFLLHERVTFK
HHHHHCCCCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
DRRKGSVVKRFLHYEAASVLGAAAQLAFLLGLTYAGVHYLISNLIGIVVGLGIRYSYSAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
KAWPA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA