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The map label for this gene is ymdB [C]

Identifier: 156937232

GI number: 156937232

Start: 389444

End: 389971

Strand: Reverse

Name: ymdB [C]

Synonym: Igni_0438

Alternate gene names: 156937232

Gene position: 389971-389444 (Counterclockwise)

Preceding gene: 156937234

Following gene: 156937231

Centisome position: 30.05

GC content: 62.69

Gene sequence:

>528_bases
TTGAGGCTCAAGGTGGGCTCTTGCGAGGTGGTGTTGACCGAAGGGGACATAACGGAGTTCGAGGGGAACGCGATAGTTAA
CGCGGCCAACAGCTTGATGATCATGGGAGGGGGAGTGGCGGGCGCGATAAAGAGGAAGGGCGGAGAAGAGATAGAGAGGG
AAGCCGTCGAGAAGGCCCCGGTGCCGGTGGGGGAGGCGATCGCCACCTCGGCGGGCAAGCTCAAGGTGAAGTACGTCATC
CACGCCCCGACTATGGAGAGGCCCGCGATGAGGGTGCCCCCGGAGAACGCTTACTTAGCTACCAAGGCCGCCCTGAAGGT
CGCGAAGGAGCTGGGCCTGAAGAAGGTGGCATTCCCAATGATGGGCGCCGGGGTGGGAGGGCTGAGCGTGGGGACGGCCG
CTAAGGAGATGTTGAAGGCAATAAAGGAGAGCTGCGAGGGCATGGAAGTGTGGCTCTACGCCTACGGCGAAAAGGCGTAC
GAGGAGCTCTTGAGGGCGGCCCGGGAGTTCGCGGAGGGCGGCTCATAA

Upstream 100 bases:

>100_bases
TGGGCGGTGAGGAGCAGCAAGGCGATAGCCGAGAGCCTCTCTATCAAGCCGCGCTCCCCCTCCAAAAACCTCCGGCCCCT
TAAGCCCCCGGGGACTTGCG

Downstream 100 bases:

>100_bases
ACCCCCTTTTGTCGCCTCTCAGGGCCGCCGTAGCTCAGCTGGCAGAGCGCCGGCCTTGTATCCGGTACCTCTGGGAGTAC
CGGCCGGAGAGCCGGTGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MRLKVGSCEVVLTEGDITEFEGNAIVNAANSLMIMGGGVAGAIKRKGGEEIEREAVEKAPVPVGEAIATSAGKLKVKYVI
HAPTMERPAMRVPPENAYLATKAALKVAKELGLKKVAFPMMGAGVGGLSVGTAAKEMLKAIKESCEGMEVWLYAYGEKAY
EELLRAAREFAEGGS

Sequences:

>Translated_175_residues
MRLKVGSCEVVLTEGDITEFEGNAIVNAANSLMIMGGGVAGAIKRKGGEEIEREAVEKAPVPVGEAIATSAGKLKVKYVI
HAPTMERPAMRVPPENAYLATKAALKVAKELGLKKVAFPMMGAGVGGLSVGTAAKEMLKAIKESCEGMEVWLYAYGEKAY
EELLRAAREFAEGGS
>Mature_175_residues
MRLKVGSCEVVLTEGDITEFEGNAIVNAANSLMIMGGGVAGAIKRKGGEEIEREAVEKAPVPVGEAIATSAGKLKVKYVI
HAPTMERPAMRVPPENAYLATKAALKVAKELGLKKVAFPMMGAGVGGLSVGTAAKEMLKAIKESCEGMEVWLYAYGEKAY
EELLRAAREFAEGGS

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=159, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI117968621, Length=136, Percent_Identity=37.5, Blast_Score=68, Evalue=4e-12,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=31.2138728323699, Blast_Score=62, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538214, Length=137, Percent_Identity=35.036496350365, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18431; Mature: 18431

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKVGSCEVVLTEGDITEFEGNAIVNAANSLMIMGGGVAGAIKRKGGEEIEREAVEKAP
CCCCCCCEEEEEECCCCEEECCCEEEECCCEEEEEECCCHHHHHHCCCHHHHHHHHHHCC
VPVGEAIATSAGKLKVKYVIHAPTMERPAMRVPPENAYLATKAALKVAKELGLKKVAFPM
CCCCHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
MGAGVGGLSVGTAAKEMLKAIKESCEGMEVWLYAYGEKAYEELLRAAREFAEGGS
HCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLKVGSCEVVLTEGDITEFEGNAIVNAANSLMIMGGGVAGAIKRKGGEEIEREAVEKAP
CCCCCCCEEEEEECCCCEEECCCEEEECCCEEEEEECCCHHHHHHCCCHHHHHHHHHHCC
VPVGEAIATSAGKLKVKYVIHAPTMERPAMRVPPENAYLATKAALKVAKELGLKKVAFPM
CCCCHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
MGAGVGGLSVGTAAKEMLKAIKESCEGMEVWLYAYGEKAYEELLRAAREFAEGGS
HCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]