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The map label for this gene is yciO [C]

Identifier: 156937167

GI number: 156937167

Start: 328987

End: 329595

Strand: Reverse

Name: yciO [C]

Synonym: Igni_0373

Alternate gene names: 156937167

Gene position: 329595-328987 (Counterclockwise)

Preceding gene: 156937168

Following gene: 156937164

Centisome position: 25.4

GC content: 63.22

Gene sequence:

>609_bases
TTGAGGGTCCTCAGGCCTAGGAGCGAGGAGGATGTTCGGAGGGCCTTAATCGAGGCGAAGGAAGTTTTGGAGTCCGGGGG
GCTCGTAATCATCCCTACTGAGACCGTCTACGGCATAGCGTCTAAGCTGGAGTTCGCGGAGAAGATATACGAGGCCAAGA
GGAGGCCGAGGGACAAGCCCTTACCCGTGCAGACGCCCTTGGGGAGGCACCGGGAGGTCGGCGAGTTCGACGAGGCGGCG
GAGGCTCTGGCCAAGGCCTTCTGGCCCGGGCCTCTGACCATAGTGGTGAAGGCCAAGCCTTGGCTCCCCGAGGCCGTCAC
CGCGGGGACGGGCAAGGTCGGGGTGAGGGTGCCCGCCCACCCGTTCGCGCTCAAGCTCTTGGAGCTCGTGGGCCCCTTGG
CGGTCACTTCTGCCAACCTGAGCGGGGGCAAGAGTCCCAAGAGCGCGGAAGAGGTGACCGTGGAGGCCGACTTGTTAATA
GACATGGGCCCCGTCGAGGGCACGCCGTCAACTGTGGTCGAGGTAGAGGGTAAGAAGGTAAAGGTCTTGAGGAGGGGGCC
CATAAGCGAGGAGGAGATACAAAAAGTCCTCAGCGCACTGCGCAGCTGA

Upstream 100 bases:

>100_bases
TGTTCGTGCTCTATTACTTGGCAATAATTATGGCTGAGAGGGCTCTGAGGGAGAGGCAACAAAAAACCCCTTCGTTCGAG
TTCAACTACAAGGGAGGGAG

Downstream 100 bases:

>100_bases
CGCACACCTCAGAGGCCCCGAGGAGCTCCACCACTGAGCTCGGGTAGTACTTGTCGCGATAGACGCACAACAAGTACCTC
CCGGGGGAGAGCGCCACCCT

Product: translation factor SUA5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MRVLRPRSEEDVRRALIEAKEVLESGGLVIIPTETVYGIASKLEFAEKIYEAKRRPRDKPLPVQTPLGRHREVGEFDEAA
EALAKAFWPGPLTIVVKAKPWLPEAVTAGTGKVGVRVPAHPFALKLLELVGPLAVTSANLSGGKSPKSAEEVTVEADLLI
DMGPVEGTPSTVVEVEGKKVKVLRRGPISEEEIQKVLSALRS

Sequences:

>Translated_202_residues
MRVLRPRSEEDVRRALIEAKEVLESGGLVIIPTETVYGIASKLEFAEKIYEAKRRPRDKPLPVQTPLGRHREVGEFDEAA
EALAKAFWPGPLTIVVKAKPWLPEAVTAGTGKVGVRVPAHPFALKLLELVGPLAVTSANLSGGKSPKSAEEVTVEADLLI
DMGPVEGTPSTVVEVEGKKVKVLRRGPISEEEIQKVLSALRS
>Mature_202_residues
MRVLRPRSEEDVRRALIEAKEVLESGGLVIIPTETVYGIASKLEFAEKIYEAKRRPRDKPLPVQTPLGRHREVGEFDEAA
EALAKAFWPGPLTIVVKAKPWLPEAVTAGTGKVGVRVPAHPFALKLLELVGPLAVTSANLSGGKSPKSAEEVTVEADLLI
DMGPVEGTPSTVVEVEGKKVKVLRRGPISEEEIQKVLSALRS

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=160, Percent_Identity=35.625, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87081864, Length=190, Percent_Identity=27.3684210526316, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17537239, Length=205, Percent_Identity=31.7073170731707, Blast_Score=102, Evalue=9e-23,
Organism=Saccharomyces cerevisiae, GI6321269, Length=210, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI78707274, Length=145, Percent_Identity=31.7241379310345, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21853; Mature: 21853

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLRPRSEEDVRRALIEAKEVLESGGLVIIPTETVYGIASKLEFAEKIYEAKRRPRDKP
CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC
LPVQTPLGRHREVGEFDEAAEALAKAFWPGPLTIVVKAKPWLPEAVTAGTGKVGVRVPAH
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCCC
PFALKLLELVGPLAVTSANLSGGKSPKSAEEVTVEADLLIDMGPVEGTPSTVVEVEGKKV
HHHHHHHHHHCCHHEEECCCCCCCCCCCHHHEEEEEEEEEEECCCCCCCCEEEEECCCEE
KVLRRGPISEEEIQKVLSALRS
EEEECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRVLRPRSEEDVRRALIEAKEVLESGGLVIIPTETVYGIASKLEFAEKIYEAKRRPRDKP
CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC
LPVQTPLGRHREVGEFDEAAEALAKAFWPGPLTIVVKAKPWLPEAVTAGTGKVGVRVPAH
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCCC
PFALKLLELVGPLAVTSANLSGGKSPKSAEEVTVEADLLIDMGPVEGTPSTVVEVEGKKV
HHHHHHHHHHCCHHEEECCCCCCCCCCCHHHEEEEEEEEEEECCCCCCCCEEEEECCCEE
KVLRRGPISEEEIQKVLSALRS
EEEECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]