| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is glcB [H]
Identifier: 154248172
GI number: 154248172
Start: 4717931
End: 4720102
Strand: Direct
Name: glcB [H]
Synonym: Xaut_4252
Alternate gene names: 154248172
Gene position: 4717931-4720102 (Clockwise)
Preceding gene: 154248171
Following gene: 154248173
Centisome position: 88.87
GC content: 68.32
Gene sequence:
>2172_bases ATGGCAAGTGGGACCGAGGCCCGGGTGGAACGCGCCGGGCTGCAAATCGCGCGTACTCTGCACGACTTCATTGAAACCGA GGCATTGCCCGGCAGCGGCATCGAGGCGGACGTCTTCTGGGAGGGCCTTTCCGCCATCGCCCACGACCTGGCACCGCGCA ACCGCGAACTCCTGGCGCGGCGCGAGGAGCTGCAGAAGACCCTCGACCAGTGGTATCGCGACAATGGCACCCCCCTCGAT CTGGAGGCCTACAAGGCCTTCCTGACAAAGATCGGCTATCTGGTGCCCGAAGGCCCCGCCTTCAGCGTGACCACGGCCAA TGTGGACCCCGAGATCGCCGAAGTGGCCGGCCCGCAGCTGGTCGTGCCGGTGATGAACGCGCGCTACGCGCTGAATGCCG CCAATGCGCGCTGGGGCTCGCTCTATGACGCGCTCTACGGCACCGACGCCATCCCCGAGACCGACGGCGCCGAGAAGGGC AAGGGCTACAATCCCGTCCGCGGCGCCAAGGTCATCGCCTGGGGCCGCGCGTTCCTCGACGAGAGCGCGCCCCTGAAGGC CGGCTCCTGGGCCGATGCCGGTCCGCTGTCGGTCAAGGACGGCGCCCTTGCGGTCGGCGCCACCGGCCTTGCGGACCCGT CCCAGTTCGCCGGCTATCGGGGCGAGGCCTCGGCGCCGTCCGCCGTGCTGCTGAAGAAGAACGGCCTCCATGTGGAGATC GTGGTGGACCGCGCCAGCGTCATCGGCAAGGACGATACCGCCGGCATCTCCGACCTGGTGCTGGAAGCCGCCCTCACCAC CATCCAGGACTGCGAGGATTCCGTCGCCGCCGTGGATGCGGAGGACAAGGTCGCGGTCTACCGCAACTGGCTCGGCCTGA TGAGCGGCGACCTCAAGGAGGAGATCGCCAAGGGCGGGCGCATCTTCACCCGCAGCCTGAATCCCGACCGGGAATATACC GCGCCGGACGGCTGCACCCTGGTGCTGCCGGGCCGCTCGCTCATGCTGGTGCGCAACGTGGGCCACCTCATGACCAATCC GGCCATCCTGCTGAAGGACGGCTCGGAAATCCCCGAGGGCATCATGGATGCCGCCGTCACCGCGCTCATCGCCCTGCGCG ACATCGGCCCCAACGGACGCCGCGCCAACAGCCGCGCCGGCTCCATGTATGTGGTCAAGCCCAAGATGCACGGGCCGGAA GAGGTGGCGTTCGCGGTGGAGATCTTCGACCGCGTCGAGGATCTGCTGGGCCTGCCCAGCGACACCATCAAGATGGGCAT CATGGACGAGGAGCGCCGCACCACGGTGAACCTGAAGGAGAGCATCCGCGCCGCATCCAGCCGGGTTGCCTTCATCAACA CCGGCTTCCTCGACCGCACCGGCGACGAGATCCACACTTCCATGGAAGCCGGCCCCATGGTCCGCAAGGGCGACATGAAG CAGGCTGCCTGGATCAGCGCCTACGAGGCCCGCAACGTGGACATCGGCCTGGAGTGCGGCCTTGCCGGCCATGCCCAGAT CGGCAAGGGCATGTGGGCCATGCCGGACCTGATGGCCGCCATGCTTGAGCAGAAGATCGCCCACCCCAAGGCCGGCGCCA ACACCGCCTGGGTGCCGTCGCCCACTGCCGCCACCCTGCACGCCACCCACTATCACAAGGTGGACGTGCATCAGGTGCAG GCCGCGCTGCGCAGCCGCCCGAAGGCCAAGCTGGACGATCTCCTGACCATCCCGGTGGCGGTGCGGCCGAACTGGACGCC CGAGGACATCCAGCACGAGCTGGACAACAATGCCCAGGGCATCCTCGGCTATGTGGTGCGCTGGGTCGACCAGGGCGTCG GCTGCTCCAAGGTGCCGGACATCCACGACGTGGGCCTGATGGAGGATCGCGCCACCCTGCGCATCTCCGCCCAGCACATG GCTAACTGGCTGCGCCACGGCGTGTGCAGCGAGGCGCAGGTGCTGGAGACACTGAAGCGCATGGCGGCGGTGGTGGACCG GCAGAATGCCGGCGATCCGCTCTACCGGCCCATGGCGCCGGACTTCACCTCCATCGCCTTCCAGGCCGCCTGCGACCTCG TCTTCAAGGGCCGCGAGCAGCCGAGCGGCTACACCGAGCCGCTGCTCCACCAGCGCCGGCTGGAGCTGAAGGCGCAGAGC GCCGCGGCCTGA
Upstream 100 bases:
>100_bases TTGCGGCGTAGAACAAGCGGGCGAGGCTGCTGGCGTCTCAGACGGACCAGCGCTCCTCAGGATGTACCTCGCCCTGGGAA AAGGACGACACGGAGTGACC
Downstream 100 bases:
>100_bases CACGCCTCTCACACACGAACCGGAGCGCGGCCGCAGTGTTGCGCTCCGGTAGTGGGCGAGAACCCAGCGCGTCGGCGCGG GCCACGCCAAAAGGGTCGTT
Product: malate synthase G
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 723; Mature: 722
Protein sequence:
>723_residues MASGTEARVERAGLQIARTLHDFIETEALPGSGIEADVFWEGLSAIAHDLAPRNRELLARREELQKTLDQWYRDNGTPLD LEAYKAFLTKIGYLVPEGPAFSVTTANVDPEIAEVAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAIPETDGAEKG KGYNPVRGAKVIAWGRAFLDESAPLKAGSWADAGPLSVKDGALAVGATGLADPSQFAGYRGEASAPSAVLLKKNGLHVEI VVDRASVIGKDDTAGISDLVLEAALTTIQDCEDSVAAVDAEDKVAVYRNWLGLMSGDLKEEIAKGGRIFTRSLNPDREYT APDGCTLVLPGRSLMLVRNVGHLMTNPAILLKDGSEIPEGIMDAAVTALIALRDIGPNGRRANSRAGSMYVVKPKMHGPE EVAFAVEIFDRVEDLLGLPSDTIKMGIMDEERRTTVNLKESIRAASSRVAFINTGFLDRTGDEIHTSMEAGPMVRKGDMK QAAWISAYEARNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHATHYHKVDVHQVQ AALRSRPKAKLDDLLTIPVAVRPNWTPEDIQHELDNNAQGILGYVVRWVDQGVGCSKVPDIHDVGLMEDRATLRISAQHM ANWLRHGVCSEAQVLETLKRMAAVVDRQNAGDPLYRPMAPDFTSIAFQAACDLVFKGREQPSGYTEPLLHQRRLELKAQS AAA
Sequences:
>Translated_723_residues MASGTEARVERAGLQIARTLHDFIETEALPGSGIEADVFWEGLSAIAHDLAPRNRELLARREELQKTLDQWYRDNGTPLD LEAYKAFLTKIGYLVPEGPAFSVTTANVDPEIAEVAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAIPETDGAEKG KGYNPVRGAKVIAWGRAFLDESAPLKAGSWADAGPLSVKDGALAVGATGLADPSQFAGYRGEASAPSAVLLKKNGLHVEI VVDRASVIGKDDTAGISDLVLEAALTTIQDCEDSVAAVDAEDKVAVYRNWLGLMSGDLKEEIAKGGRIFTRSLNPDREYT APDGCTLVLPGRSLMLVRNVGHLMTNPAILLKDGSEIPEGIMDAAVTALIALRDIGPNGRRANSRAGSMYVVKPKMHGPE EVAFAVEIFDRVEDLLGLPSDTIKMGIMDEERRTTVNLKESIRAASSRVAFINTGFLDRTGDEIHTSMEAGPMVRKGDMK QAAWISAYEARNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHATHYHKVDVHQVQ AALRSRPKAKLDDLLTIPVAVRPNWTPEDIQHELDNNAQGILGYVVRWVDQGVGCSKVPDIHDVGLMEDRATLRISAQHM ANWLRHGVCSEAQVLETLKRMAAVVDRQNAGDPLYRPMAPDFTSIAFQAACDLVFKGREQPSGYTEPLLHQRRLELKAQS AAA >Mature_722_residues ASGTEARVERAGLQIARTLHDFIETEALPGSGIEADVFWEGLSAIAHDLAPRNRELLARREELQKTLDQWYRDNGTPLDL EAYKAFLTKIGYLVPEGPAFSVTTANVDPEIAEVAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAIPETDGAEKGK GYNPVRGAKVIAWGRAFLDESAPLKAGSWADAGPLSVKDGALAVGATGLADPSQFAGYRGEASAPSAVLLKKNGLHVEIV VDRASVIGKDDTAGISDLVLEAALTTIQDCEDSVAAVDAEDKVAVYRNWLGLMSGDLKEEIAKGGRIFTRSLNPDREYTA PDGCTLVLPGRSLMLVRNVGHLMTNPAILLKDGSEIPEGIMDAAVTALIALRDIGPNGRRANSRAGSMYVVKPKMHGPEE VAFAVEIFDRVEDLLGLPSDTIKMGIMDEERRTTVNLKESIRAASSRVAFINTGFLDRTGDEIHTSMEAGPMVRKGDMKQ AAWISAYEARNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHATHYHKVDVHQVQA ALRSRPKAKLDDLLTIPVAVRPNWTPEDIQHELDNNAQGILGYVVRWVDQGVGCSKVPDIHDVGLMEDRATLRISAQHMA NWLRHGVCSEAQVLETLKRMAAVVDRQNAGDPLYRPMAPDFTSIAFQAACDLVFKGREQPSGYTEPLLHQRRLELKAQSA AA
Specific function: Accounts For Almost The Entire Malate-Synthesizing Activity In Cells Metabolizing Glyoxylate. [C]
COG id: COG2225
COG function: function code C; Malate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malate synthase family. GlcB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789348, Length=721, Percent_Identity=59.7780859916782, Blast_Score=873, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011076 - InterPro: IPR001465 - InterPro: IPR006253 [H]
Pfam domain/function: PF01274 Malate_synthase [H]
EC number: =2.3.3.9 [H]
Molecular weight: Translated: 78129; Mature: 77997
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASGTEARVERAGLQIARTLHDFIETEALPGSGIEADVFWEGLSAIAHDLAPRNRELLAR CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH REELQKTLDQWYRDNGTPLDLEAYKAFLTKIGYLVPEGPAFSVTTANVDPEIAEVAGPQL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCEE VVPVMNARYALNAANARWGSLYDALYGTDAIPETDGAEKGKGYNPVRGAKVIAWGRAFLD EEEECCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHC ESAPLKAGSWADAGPLSVKDGALAVGATGLADPSQFAGYRGEASAPSAVLLKKNGLHVEI CCCCCCCCCCCCCCCCEECCCCEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCEEEE VVDRASVIGKDDTAGISDLVLEAALTTIQDCEDSVAAVDAEDKVAVYRNWLGLMSGDLKE EEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCHHHH EIAKGGRIFTRSLNPDREYTAPDGCTLVLPGRSLMLVRNVGHLMTNPAILLKDGSEIPEG HHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHCCCEEEEECCCCCHHH IMDAAVTALIALRDIGPNGRRANSRAGSMYVVKPKMHGPEEVAFAVEIFDRVEDLLGLPS HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC DTIKMGIMDEERRTTVNLKESIRAASSRVAFINTGFLDRTGDEIHTSMEAGPMVRKGDMK HHEEECCCCCCHHHEECHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCH QAAWISAYEARNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPS HHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC PTAATLHATHYHKVDVHQVQAALRSRPKAKLDDLLTIPVAVRPNWTPEDIQHELDNNAQG CCCCEEEECEEEECHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHH ILGYVVRWVDQGVGCSKVPDIHDVGLMEDRATLRISAQHMANWLRHGVCSEAQVLETLKR HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHH MAAVVDRQNAGDPLYRPMAPDFTSIAFQAACDLVFKGREQPSGYTEPLLHQRRLELKAQS HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH AAA CCC >Mature Secondary Structure ASGTEARVERAGLQIARTLHDFIETEALPGSGIEADVFWEGLSAIAHDLAPRNRELLAR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH REELQKTLDQWYRDNGTPLDLEAYKAFLTKIGYLVPEGPAFSVTTANVDPEIAEVAGPQL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCEE VVPVMNARYALNAANARWGSLYDALYGTDAIPETDGAEKGKGYNPVRGAKVIAWGRAFLD EEEECCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHC ESAPLKAGSWADAGPLSVKDGALAVGATGLADPSQFAGYRGEASAPSAVLLKKNGLHVEI CCCCCCCCCCCCCCCCEECCCCEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCEEEE VVDRASVIGKDDTAGISDLVLEAALTTIQDCEDSVAAVDAEDKVAVYRNWLGLMSGDLKE EEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCHHHH EIAKGGRIFTRSLNPDREYTAPDGCTLVLPGRSLMLVRNVGHLMTNPAILLKDGSEIPEG HHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHCCCEEEEECCCCCHHH IMDAAVTALIALRDIGPNGRRANSRAGSMYVVKPKMHGPEEVAFAVEIFDRVEDLLGLPS HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC DTIKMGIMDEERRTTVNLKESIRAASSRVAFINTGFLDRTGDEIHTSMEAGPMVRKGDMK HHEEECCCCCCHHHEECHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCH QAAWISAYEARNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPS HHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC PTAATLHATHYHKVDVHQVQAALRSRPKAKLDDLLTIPVAVRPNWTPEDIQHELDNNAQG CCCCEEEECEEEECHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHH ILGYVVRWVDQGVGCSKVPDIHDVGLMEDRATLRISAQHMANWLRHGVCSEAQVLETLKR HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHH MAAVVDRQNAGDPLYRPMAPDFTSIAFQAACDLVFKGREQPSGYTEPLLHQRRLELKAQS HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH AAA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]