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The map label for this gene is insD1 [C]

Identifier: 154247926

GI number: 154247926

Start: 4433438

End: 4434292

Strand: Direct

Name: insD1 [C]

Synonym: Xaut_4005

Alternate gene names: 154247926

Gene position: 4433438-4434292 (Clockwise)

Preceding gene: 154247925

Following gene: 154247940

Centisome position: 83.51

GC content: 65.61

Gene sequence:

>855_bases
ATGTCAGCTCAAAAAATGGTGACGCCCGATGCGAGGCGCAAAGCCGTGGCTCATGCCTGTGCGGCGCACGGGGTGAGCCA
GCGTCGGGCGTGCCAGGCGCTGGGCGTCGATCGCACCAGCGTGCGCTACCGAAGTGTGCGTCCCGACGATGCACCCCTGA
GGGAGGCCATGCGGGCCGTGGCCGGCGAACGCCGCCGCTTCGGCTATAGGCGCATCCACATCATGCTGAGGCGCCAGGGC
ATCGTCATGAACCAGAAGAAGCTGCGCCGGCTGTATCGGGAAGAGAAGCTTCAGGTTCGCCGGCGTGGGGGACGCAAGCG
AGCGCTCGGCACGAGGCGTCCCATCCTGGTGCCGGATCGGGTCAACGTCCGCTGGAGCCTCGATTTCGTGTCGGATGCCT
TCACGGACGGTCGGCGCTTCCGGGTGCTGGCCGTCGTCGACGACTTCAGCCGGGAGTGTCTGGCGCTGGTGGCCGACACC
TCGCTCTCGGGCCTTCGGGTGACGCGCGAGCTCGACGCGCTGCTCGCCATTCGAGGCAGGCCTGCAACCATCGTTTCCGA
CAACGGCACGGAGCTGACTTCGATGGCAATTCTCAAATGGTGCCAGCAGACCGGCGTCGAATGGCACTACATCGCTCCCG
GCAAGCCCATGCAGAACGGCTTCGTCGAGAGCTTCAACGGCCGCTTCCGGGACGAATGCCTGAACGAGACCCTGTTCTCG
AGCCTGGCGCAGGCCCGTGCCGCCATCGCCGCATGGAAGGAGGACTACAATATGAACAGGCCCCATTCCGCCCTCGGCCA
TCGATCCCCTGCCGAGTTCGCCGCAACAATCGCACTGGAAATCCAGGCCGCCTGA

Upstream 100 bases:

>100_bases
GACGTGTCCGATGCCCGGCGGCTGAAGGCGCTTGAGGAGGAGAATACGCGGCTGAAGAAGCTGCTGGCCGAGCAAATGCT
CGACAACGCGATCCTGAGGG

Downstream 100 bases:

>100_bases
GGCCAAAAATGAAACCTAGGACTCTCTCCTAAGCCGGAGGAGAAAAGGGGCTCAGGTCAGCTCCTGTAACATAATACCGT
ATGGCTTTGGCGGATTCCGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSAQKMVTPDARRKAVAHACAAHGVSQRRACQALGVDRTSVRYRSVRPDDAPLREAMRAVAGERRRFGYRRIHIMLRRQG
IVMNQKKLRRLYREEKLQVRRRGGRKRALGTRRPILVPDRVNVRWSLDFVSDAFTDGRRFRVLAVVDDFSRECLALVADT
SLSGLRVTRELDALLAIRGRPATIVSDNGTELTSMAILKWCQQTGVEWHYIAPGKPMQNGFVESFNGRFRDECLNETLFS
SLAQARAAIAAWKEDYNMNRPHSALGHRSPAEFAATIALEIQAA

Sequences:

>Translated_284_residues
MSAQKMVTPDARRKAVAHACAAHGVSQRRACQALGVDRTSVRYRSVRPDDAPLREAMRAVAGERRRFGYRRIHIMLRRQG
IVMNQKKLRRLYREEKLQVRRRGGRKRALGTRRPILVPDRVNVRWSLDFVSDAFTDGRRFRVLAVVDDFSRECLALVADT
SLSGLRVTRELDALLAIRGRPATIVSDNGTELTSMAILKWCQQTGVEWHYIAPGKPMQNGFVESFNGRFRDECLNETLFS
SLAQARAAIAAWKEDYNMNRPHSALGHRSPAEFAATIALEIQAA
>Mature_283_residues
SAQKMVTPDARRKAVAHACAAHGVSQRRACQALGVDRTSVRYRSVRPDDAPLREAMRAVAGERRRFGYRRIHIMLRRQGI
VMNQKKLRRLYREEKLQVRRRGGRKRALGTRRPILVPDRVNVRWSLDFVSDAFTDGRRFRVLAVVDDFSRECLALVADTS
LSGLRVTRELDALLAIRGRPATIVSDNGTELTSMAILKWCQQTGVEWHYIAPGKPMQNGFVESFNGRFRDECLNETLFSS
LAQARAAIAAWKEDYNMNRPHSALGHRSPAEFAATIALEIQAA

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789424, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789224, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788305, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787669, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786558, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789981, Length=244, Percent_Identity=25.4098360655738, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786462, Length=152, Percent_Identity=28.9473684210526, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32157; Mature: 32026

Theoretical pI: Translated: 11.49; Mature: 11.49

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQKMVTPDARRKAVAHACAAHGVSQRRACQALGVDRTSVRYRSVRPDDAPLREAMRAV
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCEEECCCCCCHHHHHHHHHH
AGERRRFGYRRIHIMLRRQGIVMNQKKLRRLYREEKLQVRRRGGRKRALGTRRPILVPDR
HHHHHHCCHHHHEEEHHHCCCEECHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEECCCC
VNVRWSLDFVSDAFTDGRRFRVLAVVDDFSRECLALVADTSLSGLRVTRELDALLAIRGR
CCEEEEHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
PATIVSDNGTELTSMAILKWCQQTGVEWHYIAPGKPMQNGFVESFNGRFRDECLNETLFS
CCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHH
SLAQARAAIAAWKEDYNMNRPHSALGHRSPAEFAATIALEIQAA
HHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHEEEEEEEEECC
>Mature Secondary Structure 
SAQKMVTPDARRKAVAHACAAHGVSQRRACQALGVDRTSVRYRSVRPDDAPLREAMRAV
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCEEECCCCCCHHHHHHHHHH
AGERRRFGYRRIHIMLRRQGIVMNQKKLRRLYREEKLQVRRRGGRKRALGTRRPILVPDR
HHHHHHCCHHHHEEEHHHCCCEECHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEECCCC
VNVRWSLDFVSDAFTDGRRFRVLAVVDDFSRECLALVADTSLSGLRVTRELDALLAIRGR
CCEEEEHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
PATIVSDNGTELTSMAILKWCQQTGVEWHYIAPGKPMQNGFVESFNGRFRDECLNETLFS
CCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHH
SLAQARAAIAAWKEDYNMNRPHSALGHRSPAEFAATIALEIQAA
HHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]