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The map label for this gene is rpoZ

Identifier: 154247760

GI number: 154247760

Start: 4255207

End: 4255596

Strand: Direct

Name: rpoZ

Synonym: Xaut_3837

Alternate gene names: 154247760

Gene position: 4255207-4255596 (Clockwise)

Preceding gene: 154247757

Following gene: 154247761

Centisome position: 80.15

GC content: 65.64

Gene sequence:

>390_bases
ATGGCCCGTGTCACGGTTGAAGATTGCATCGACAAGGTGGACAACCGGTTCGAGCTGGTCCTGCTCGCCGCCCACCGGGC
GCGCATGATCTCGTCCGGCGCCCAGATCACCGTTGATCGCGACAACGACAAGAACCCCGTGGTCGCCCTGCGCGAGATTG
CCGACGAGCACGTCGGCCCCGAGGATCTGAAGGAAGACCTCATCCACTCGCTGCAGAAATACACCGAGGTGGACGAGCCC
GAGCCCGAGGCGGTGCCCATGATCGCTTCCGGCGACAGCTCGGGCGGCGAGGACAGTGACGTGATGCTCGACCGGATGAC
CGAGGAAGAGCTGCTCGCCGGCCTTCAGGGCCTCGTGCCCCCGGAGCACACCGACGACGACGAAGGCTGA

Upstream 100 bases:

>100_bases
GGCAGGGCGGGCTTGCCCATCATGGTGAATTGCTGTACTGACCCGCTCTTCCCAAGGCCGATAGTTGCGCGCCTTATGCG
CATGAGGGAGTGACGAGCCC

Downstream 100 bases:

>100_bases
TCTGCCGGGCTGATCGGCCTAGCCGATCATCAGCCGTGCACCCGCGTGCAGTTTGGTGCCATAGCGCTATTCACGGCCGG
GCCAGTCCCGGCCGTTTCGT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MARVTVEDCIDKVDNRFELVLLAAHRARMISSGAQITVDRDNDKNPVVALREIADEHVGPEDLKEDLIHSLQKYTEVDEP
EPEAVPMIASGDSSGGEDSDVMLDRMTEEELLAGLQGLVPPEHTDDDEG

Sequences:

>Translated_129_residues
MARVTVEDCIDKVDNRFELVLLAAHRARMISSGAQITVDRDNDKNPVVALREIADEHVGPEDLKEDLIHSLQKYTEVDEP
EPEAVPMIASGDSSGGEDSDVMLDRMTEEELLAGLQGLVPPEHTDDDEG
>Mature_128_residues
ARVTVEDCIDKVDNRFELVLLAAHRARMISSGAQITVDRDNDKNPVVALREIADEHVGPEDLKEDLIHSLQKYTEVDEPE
PEAVPMIASGDSSGGEDSDVMLDRMTEEELLAGLQGLVPPEHTDDDEG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_XANP2 (A7IM18)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001418718.1
- STRING:   A7IM18
- GeneID:   5421147
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_3837
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   KVDNRFE
- ProtClustDB:   PRK00392
- BioCyc:   XAUT78245:XAUT_3837-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14180; Mature: 14049

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVDNRFELVLLAAHRARMISSGAQITVDRDNDKNPVVALREIADEHVGP
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCH
EDLKEDLIHSLQKYTEVDEPEPEAVPMIASGDSSGGEDSDVMLDRMTEEELLAGLQGLVP
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCHHHHHHHHHCCCC
PEHTDDDEG
CCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVDNRFELVLLAAHRARMISSGAQITVDRDNDKNPVVALREIADEHVGP
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCH
EDLKEDLIHSLQKYTEVDEPEPEAVPMIASGDSSGGEDSDVMLDRMTEEELLAGLQGLVP
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCHHHHHHHHHCCCC
PEHTDDDEG
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA