Click here to switch to the map view.

The map label for this gene is rcoM1 [H]

Identifier: 154246483

GI number: 154246483

Start: 2837464

End: 2838270

Strand: Reverse

Name: rcoM1 [H]

Synonym: Xaut_2542

Alternate gene names: 154246483

Gene position: 2838270-2837464 (Counterclockwise)

Preceding gene: 154246487

Following gene: 154246482

Centisome position: 53.46

GC content: 70.51

Gene sequence:

>807_bases
ATGGCCGACACACCAGCCGCCCGCGCGTCCGCGCCGGCCGGCCAATCGTTCGAGTATCGCCTCCAGCGCACCCCCGTAGG
CGTGGTGCTGCTCGATGCCGATCTCACCATCCGCTCGGTGAACCCGGTGGCCATGCGCCTCCTGGCCCCGCCGGGGCAGA
GACTGGCGGGCGTGGACATCCTCTCCCTCCACCCCGACGAGGCGCGGGAGAAGGTCGCCTTCCTCATCGAGCGGGCGCGG
ACCTCGGCGGACGGCACCTCGTCGCTGGTGGTCACCACGGCCATGGGCAGCCTGATTGCCAAGATCAGCCGGCTGGAGGA
GACCCCGGACGGACCGGTGGAAGGCTTCTGCATGATGATCCATGCGCTCGCGGAAGCCCCGGTGATGGGACGCTCGCAGG
CGGACGATGCCGACGTTCAGGTGGACGGCCTCTCAGTCGCCGGGGAAGCGGCCATGAAGGCCCTGTGCCCGCTCATGAAG
CTGCCGCTGGTGCAGGGCAAGGGCGACCTCATCAGCCTCATCGATGTCAACGAGGTGGTGTGCCTGGTGGCCCAGGGGCA
TTATGCGGAGGCGCGCACCCTCGGCTTCTCCGCCTTCTGCCCGCGCCCGCTGGCGGACCTGGAGCGGCGGCTGGATCCGG
CGCTGTTCGTGCGCGTCCATCGGCGCTACCTGGTCAACATCCGCCATGTGCGCGCCGCCACCCGCGAGGACGGCGCCTGG
CACCTGGTGATGGCCGACACCGCCCGGACCCGCGTGCCGGTGAGCCGCGGCAAGGTGGAGGCAATCCGCCGGCTTCTGGC
GGTTTGA

Upstream 100 bases:

>100_bases
GCCCGCGCGGCGCCTGAGCGGACCCACTCGGCATCGGCCAAAGATCGATGCCGATGGTATAAGCTGGCGGTGCCCCGATG
CGGGCAGGGAACAGCCGACC

Downstream 100 bases:

>100_bases
CGCGCCCATTAAGCGCCCCTGTGCGAGCCGGCGCATGCCGTTCGTGCAGCCGGGATGCCGTTCATGCAGGCCCCCTGTGG
GTCGCGCCTTGGCCGTTGAA

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: Regulator of CO metabolism 1; RCOM-1 [H]

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MADTPAARASAPAGQSFEYRLQRTPVGVVLLDADLTIRSVNPVAMRLLAPPGQRLAGVDILSLHPDEAREKVAFLIERAR
TSADGTSSLVVTTAMGSLIAKISRLEETPDGPVEGFCMMIHALAEAPVMGRSQADDADVQVDGLSVAGEAAMKALCPLMK
LPLVQGKGDLISLIDVNEVVCLVAQGHYAEARTLGFSAFCPRPLADLERRLDPALFVRVHRRYLVNIRHVRAATREDGAW
HLVMADTARTRVPVSRGKVEAIRRLLAV

Sequences:

>Translated_268_residues
MADTPAARASAPAGQSFEYRLQRTPVGVVLLDADLTIRSVNPVAMRLLAPPGQRLAGVDILSLHPDEAREKVAFLIERAR
TSADGTSSLVVTTAMGSLIAKISRLEETPDGPVEGFCMMIHALAEAPVMGRSQADDADVQVDGLSVAGEAAMKALCPLMK
LPLVQGKGDLISLIDVNEVVCLVAQGHYAEARTLGFSAFCPRPLADLERRLDPALFVRVHRRYLVNIRHVRAATREDGAW
HLVMADTARTRVPVSRGKVEAIRRLLAV
>Mature_267_residues
ADTPAARASAPAGQSFEYRLQRTPVGVVLLDADLTIRSVNPVAMRLLAPPGQRLAGVDILSLHPDEAREKVAFLIERART
SADGTSSLVVTTAMGSLIAKISRLEETPDGPVEGFCMMIHALAEAPVMGRSQADDADVQVDGLSVAGEAAMKALCPLMKL
PLVQGKGDLISLIDVNEVVCLVAQGHYAEARTLGFSAFCPRPLADLERRLDPALFVRVHRRYLVNIRHVRAATREDGAWH
LVMADTARTRVPVSRGKVEAIRRLLAV

Specific function: One-component, b-type heme-containing aerobic sensor and transcriptional regulator that responds to CO by activating the expression of the oxidation operon cox [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007492
- InterPro:   IPR000014 [H]

Pfam domain/function: PF04397 LytTR [H]

EC number: NA

Molecular weight: Translated: 28899; Mature: 28768

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTPAARASAPAGQSFEYRLQRTPVGVVLLDADLTIRSVNPVAMRLLAPPGQRLAGVDI
CCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCEEEECCCHHHHEEECCCCCCCCCEEE
LSLHPDEAREKVAFLIERARTSADGTSSLVVTTAMGSLIAKISRLEETPDGPVEGFCMMI
EEECCHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
HALAEAPVMGRSQADDADVQVDGLSVAGEAAMKALCPLMKLPLVQGKGDLISLIDVNEVV
HHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEE
CLVAQGHYAEARTLGFSAFCPRPLADLERRLDPALFVRVHRRYLVNIRHVRAATREDGAW
EEEECCCCCHHHHCCCHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
HLVMADTARTRVPVSRGKVEAIRRLLAV
EEEEECCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
ADTPAARASAPAGQSFEYRLQRTPVGVVLLDADLTIRSVNPVAMRLLAPPGQRLAGVDI
CCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCEEEECCCHHHHEEECCCCCCCCCEEE
LSLHPDEAREKVAFLIERARTSADGTSSLVVTTAMGSLIAKISRLEETPDGPVEGFCMMI
EEECCHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
HALAEAPVMGRSQADDADVQVDGLSVAGEAAMKALCPLMKLPLVQGKGDLISLIDVNEVV
HHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEE
CLVAQGHYAEARTLGFSAFCPRPLADLERRLDPALFVRVHRRYLVNIRHVRAATREDGAW
EEEECCCCCHHHHCCCHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
HLVMADTARTRVPVSRGKVEAIRRLLAV
EEEEECCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA