| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is dnaQ [H]
Identifier: 154246367
GI number: 154246367
Start: 2710409
End: 2712568
Strand: Reverse
Name: dnaQ [H]
Synonym: Xaut_2426
Alternate gene names: 154246367
Gene position: 2712568-2710409 (Counterclockwise)
Preceding gene: 154246368
Following gene: 154246363
Centisome position: 51.09
GC content: 72.13
Gene sequence:
>2160_bases ATGAGCTTCGACCGGCGCCTGGCGCTGATCGTGCTCGCGCCGGGCGCACTTCTCGGGCTCTGGCTCCTCGGCGGCGCCGG CTTGCTTTATGCGGCTCTCGGCCCCGCCGACCGCGCCGCCATCACCGACACCGTCGCGCCGCTGATCGACAGCCACGGCA TGCTGGTGGTGCTGTGGTGGTTCCTGGCCGCGCTCGGCACCGGCGTCGTCGCCCTGCGCCTGCATGCCATCTATGGGGAG GCGCCGGCCCGTCTCGCCGATGCCACCCGCGTGCTGGCCGGCGACGCCGCCGCCCCGCCCCTTCCCCCGCAGTCCGGTAC CGGCATGCGCGCGCTCGGCGAAGCCATCAACGCCCTCGCCGGCCAGCGCCGCGCCCTACAGGACGACATGGCCCGCCTCA TCGCCGAGGCCAGCCGCGACGTGGCGCTCCAGCGCGACCAGCTCGCCGCCCTGATGGCGGAGCTGGAGCAATCGGTGGTG GTGCTCAATCTCGAAGGGCGGATCCTGCTCTACAATGCCCGCGCCCGCGCCCTCTTCCGCACCCTCTCGCAGGCGCCGGG GGGCGTGGCCGGCGCAGAATTGATCGGTCTTGGCCGCTCCATCCATGCGGTCATCGACCGTGCCCTCATCGACCATGCCC GCGAAGGCATCGCCCGGCGCATCGCCCGCGGCGACGCCCAGGCTTCGGCGCGCTTCGTGACCACGACGCCCCTTGGCCAT CTCATCCAGGTGTCGCTGGCCCCGGTGCGCGCGGCGGCGGACGACAAGGGCGATGTCACCGGCTTCGTGCTGCTGCTGGA CGACATCACTGACGAATACGAGGCGCGCTCCCGGCAGGATCGCCGCTGGCTCGACCTCTCGGAGGCGAGCCGGGCCTCCT TCGCCAGCATGCAGGCCGCCCTCGACATGCTGGACTATCCGGACCTCGAGCCCGCCGACCGCGAGCGCTTCCAGGCCGTG GTGCGCGACGAGGTGGGGGTGATGAGCCAGCGCCTCACCACGCTCGCCGCCGACGCCTCCCACGACATGAAGACCCGCTG GCCGCTGCAGGACATGCTGGGCGCCGACCTTGCCGCCGCCGCCGCCCAGCGCATCACCGCCGAGACCGGGCAGGCGGTGG ACACGGTTGCGGTGGACGCCGACCTCTGGCTGAGCGTGGACAGCTTCGCCCTGATCCAGGCCCTCGCCTTCCTCGCCGCG CGCCTGTCCGAGACGCTGAAGGCCCCAAATCTCGCCCTGCGCCTCGCGCCGGCGGGCGGGCGAGCCCATCTCGACCTCGC ATTCCAGGGCACTGGGTCCGGCCTCGACCTCGCCGGCTGGCAGACCCGCCCCATGCAGACCTCCGACGCCCCCTCCCCCC TCACGGTGCGCGACGTGGTGGAACGGCACGGCGGAGAATTGTGGCTGGAGCATGCGCGCGACGGCTCGGGGGCCCTGTTC CGCTTCCTGCTGCCGGTGGCCGCCGGCACGGTGGCGCCGGTGCCGGCCCCCGGCGACAGCCGCCCGGCCTATTATGATTT CGACCTGTTCGCCGCGAGCGCGCAGAGCCGCGAGAGCGACGACCGTCCGCTGGGCGAGATCGCCTATACGGTGTTCGACA CCGAGACCACCGGCCTTGATCCCGCCGGCGGCGACGAAATCCTCCAGATCGGCGCCACCCGCATCGTCAACGGCCGGCTG CTCGCCAGCGAATGCTTCGACCAATTGGTGGACCCGCAGCGCTCCATCCCGGAGGCCGGCATCGCGGTGCACGGCATCCG GCCGGAGATGGTGCGCGGCAAGCCGACCCTTCCCCAGGTGCTCCCCGCCTTCCACGCCTTCGCCGCCGACACCGTTCTGG TGGGCCACAACGTGGCCTTCGACATGCGCTTTTTGACCCTCAAGGAAAACGCCAGCGGCGTGCGCTTCGACCAGCCGGTG CTCGACACCCTGTTGCTCGCCGCCATCGTCCATCCCGGGGAGGACAGCCACGGACTGGAGGCCATGGCGGCGCGCCTCGG CATCGCCGTCTCCGGCCGCCACACGGCACTGGGGGACGCGCTGGCCACCGCCGAGATCTTCCTGAAGCTGCTGCCGCTGC TGCGCCAGCGCGGCATCGTCACCCTCGGGCAGGCCCGCGCGGCGGCGCAGACCTCCTATTACGCGCGCCTGCGCTATTGA
Upstream 100 bases:
>100_bases TGGTACAGCAGGTGAAGGACATGCTGGCCCGGGATTCGGCCGCAGGGGCCGTGGCGGCGAGCAGCGCCGCGGCGGGCGAA ATGCCGAAGGACCTGCCGGC
Downstream 100 bases:
>100_bases GTCCAAGGGATCCGACCGTCGGCCGGCGCGCACGGGGTGTTGCCGCAATTCCCCCGTCATGCCCGGGCTTGTCCCGGCCA TCCACGCCTGACCACCTGGG
Product: DNA polymerase III subunit epsilon
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 719; Mature: 718
Protein sequence:
>719_residues MSFDRRLALIVLAPGALLGLWLLGGAGLLYAALGPADRAAITDTVAPLIDSHGMLVVLWWFLAALGTGVVALRLHAIYGE APARLADATRVLAGDAAAPPLPPQSGTGMRALGEAINALAGQRRALQDDMARLIAEASRDVALQRDQLAALMAELEQSVV VLNLEGRILLYNARARALFRTLSQAPGGVAGAELIGLGRSIHAVIDRALIDHAREGIARRIARGDAQASARFVTTTPLGH LIQVSLAPVRAAADDKGDVTGFVLLLDDITDEYEARSRQDRRWLDLSEASRASFASMQAALDMLDYPDLEPADRERFQAV VRDEVGVMSQRLTTLAADASHDMKTRWPLQDMLGADLAAAAAQRITAETGQAVDTVAVDADLWLSVDSFALIQALAFLAA RLSETLKAPNLALRLAPAGGRAHLDLAFQGTGSGLDLAGWQTRPMQTSDAPSPLTVRDVVERHGGELWLEHARDGSGALF RFLLPVAAGTVAPVPAPGDSRPAYYDFDLFAASAQSRESDDRPLGEIAYTVFDTETTGLDPAGGDEILQIGATRIVNGRL LASECFDQLVDPQRSIPEAGIAVHGIRPEMVRGKPTLPQVLPAFHAFAADTVLVGHNVAFDMRFLTLKENASGVRFDQPV LDTLLLAAIVHPGEDSHGLEAMAARLGIAVSGRHTALGDALATAEIFLKLLPLLRQRGIVTLGQARAAAQTSYYARLRY
Sequences:
>Translated_719_residues MSFDRRLALIVLAPGALLGLWLLGGAGLLYAALGPADRAAITDTVAPLIDSHGMLVVLWWFLAALGTGVVALRLHAIYGE APARLADATRVLAGDAAAPPLPPQSGTGMRALGEAINALAGQRRALQDDMARLIAEASRDVALQRDQLAALMAELEQSVV VLNLEGRILLYNARARALFRTLSQAPGGVAGAELIGLGRSIHAVIDRALIDHAREGIARRIARGDAQASARFVTTTPLGH LIQVSLAPVRAAADDKGDVTGFVLLLDDITDEYEARSRQDRRWLDLSEASRASFASMQAALDMLDYPDLEPADRERFQAV VRDEVGVMSQRLTTLAADASHDMKTRWPLQDMLGADLAAAAAQRITAETGQAVDTVAVDADLWLSVDSFALIQALAFLAA RLSETLKAPNLALRLAPAGGRAHLDLAFQGTGSGLDLAGWQTRPMQTSDAPSPLTVRDVVERHGGELWLEHARDGSGALF RFLLPVAAGTVAPVPAPGDSRPAYYDFDLFAASAQSRESDDRPLGEIAYTVFDTETTGLDPAGGDEILQIGATRIVNGRL LASECFDQLVDPQRSIPEAGIAVHGIRPEMVRGKPTLPQVLPAFHAFAADTVLVGHNVAFDMRFLTLKENASGVRFDQPV LDTLLLAAIVHPGEDSHGLEAMAARLGIAVSGRHTALGDALATAEIFLKLLPLLRQRGIVTLGQARAAAQTSYYARLRY >Mature_718_residues SFDRRLALIVLAPGALLGLWLLGGAGLLYAALGPADRAAITDTVAPLIDSHGMLVVLWWFLAALGTGVVALRLHAIYGEA PARLADATRVLAGDAAAPPLPPQSGTGMRALGEAINALAGQRRALQDDMARLIAEASRDVALQRDQLAALMAELEQSVVV LNLEGRILLYNARARALFRTLSQAPGGVAGAELIGLGRSIHAVIDRALIDHAREGIARRIARGDAQASARFVTTTPLGHL IQVSLAPVRAAADDKGDVTGFVLLLDDITDEYEARSRQDRRWLDLSEASRASFASMQAALDMLDYPDLEPADRERFQAVV RDEVGVMSQRLTTLAADASHDMKTRWPLQDMLGADLAAAAAQRITAETGQAVDTVAVDADLWLSVDSFALIQALAFLAAR LSETLKAPNLALRLAPAGGRAHLDLAFQGTGSGLDLAGWQTRPMQTSDAPSPLTVRDVVERHGGELWLEHARDGSGALFR FLLPVAAGTVAPVPAPGDSRPAYYDFDLFAASAQSRESDDRPLGEIAYTVFDTETTGLDPAGGDEILQIGATRIVNGRLL ASECFDQLVDPQRSIPEAGIAVHGIRPEMVRGKPTLPQVLPAFHAFAADTVLVGHNVAFDMRFLTLKENASGVRFDQPVL DTLLLAAIVHPGEDSHGLEAMAARLGIAVSGRHTALGDALATAEIFLKLLPLLRQRGIVTLGQARAAAQTSYYARLRY
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]
COG id: COG2176
COG function: function code L; DNA polymerase III, alpha subunit (gram-positive type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1786409, Length=171, Percent_Identity=35.672514619883, Blast_Score=84, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006054 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR000014 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 76575; Mature: 76444
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS50113 PAC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFDRRLALIVLAPGALLGLWLLGGAGLLYAALGPADRAAITDTVAPLIDSHGMLVVLWW CCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHH FLAALGTGVVALRLHAIYGEAPARLADATRVLAGDAAAPPLPPQSGTGMRALGEAINALA HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH GQRRALQDDMARLIAEASRDVALQRDQLAALMAELEQSVVVLNLEGRILLYNARARALFR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEHHHHHHHH TLSQAPGGVAGAELIGLGRSIHAVIDRALIDHAREGIARRIARGDAQASARFVTTTPLGH HHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCH LIQVSLAPVRAAADDKGDVTGFVLLLDDITDEYEARSRQDRRWLDLSEASRASFASMQAA HHEEEHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LDMLDYPDLEPADRERFQAVVRDEVGVMSQRLTTLAADASHDMKTRWPLQDMLGADLAAA HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHH AAQRITAETGQAVDTVAVDADLWLSVDSFALIQALAFLAARLSETLKAPNLALRLAPAGG HHHHHHHHCCCCEEEEEECCHHEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC RAHLDLAFQGTGSGLDLAGWQTRPMQTSDAPSPLTVRDVVERHGGELWLEHARDGSGALF CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEHHCCCCCHHHH RFLLPVAAGTVAPVPAPGDSRPAYYDFDLFAASAQSRESDDRPLGEIAYTVFDTETTGLD HHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCHHHEEEEEEECCCCCCC PAGGDEILQIGATRIVNGRLLASECFDQLVDPQRSIPEAGIAVHGIRPEMVRGKPTLPQV CCCCHHHHHHCCHHHCCCEEHHHHHHHHHCCCHHCCCCCCEEEECCCHHHHCCCCCHHHH LPAFHAFAADTVLVGHNVAFDMRFLTLKENASGVRFDQPVLDTLLLAAIVHPGEDSHGLE HHHHHHHHHCEEEEECCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH AMAARLGIAVSGRHTALGDALATAEIFLKLLPLLRQRGIVTLGQARAAAQTSYYARLRY HHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHEEEECC >Mature Secondary Structure SFDRRLALIVLAPGALLGLWLLGGAGLLYAALGPADRAAITDTVAPLIDSHGMLVVLWW CCCCEEEEEEECCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHH FLAALGTGVVALRLHAIYGEAPARLADATRVLAGDAAAPPLPPQSGTGMRALGEAINALA HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH GQRRALQDDMARLIAEASRDVALQRDQLAALMAELEQSVVVLNLEGRILLYNARARALFR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEHHHHHHHH TLSQAPGGVAGAELIGLGRSIHAVIDRALIDHAREGIARRIARGDAQASARFVTTTPLGH HHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCH LIQVSLAPVRAAADDKGDVTGFVLLLDDITDEYEARSRQDRRWLDLSEASRASFASMQAA HHEEEHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LDMLDYPDLEPADRERFQAVVRDEVGVMSQRLTTLAADASHDMKTRWPLQDMLGADLAAA HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHH AAQRITAETGQAVDTVAVDADLWLSVDSFALIQALAFLAARLSETLKAPNLALRLAPAGG HHHHHHHHCCCCEEEEEECCHHEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC RAHLDLAFQGTGSGLDLAGWQTRPMQTSDAPSPLTVRDVVERHGGELWLEHARDGSGALF CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEHHCCCCCHHHH RFLLPVAAGTVAPVPAPGDSRPAYYDFDLFAASAQSRESDDRPLGEIAYTVFDTETTGLD HHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCHHHEEEEEEECCCCCCC PAGGDEILQIGATRIVNGRLLASECFDQLVDPQRSIPEAGIAVHGIRPEMVRGKPTLPQV CCCCHHHHHHCCHHHCCCEEHHHHHHHHHCCCHHCCCCCCEEEECCCHHHHCCCCCHHHH LPAFHAFAADTVLVGHNVAFDMRFLTLKENASGVRFDQPVLDTLLLAAIVHPGEDSHGLE HHHHHHHHHCEEEEECCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH AMAARLGIAVSGRHTALGDALATAEIFLKLLPLLRQRGIVTLGQARAAAQTSYYARLRY HHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9256491 [H]