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The map label for this gene is lpsJ [H]

Identifier: 154246292

GI number: 154246292

Start: 2623832

End: 2624476

Strand: Direct

Name: lpsJ [H]

Synonym: Xaut_2350

Alternate gene names: 154246292

Gene position: 2623832-2624476 (Clockwise)

Preceding gene: 154246291

Following gene: 154246295

Centisome position: 49.42

GC content: 65.74

Gene sequence:

>645_bases
ATGGCCTGGACCCGTGACGAGATGGCGGCCCGCGCCGCCCAGCAGATCCGCGACGGCTTCTACGTCAACCTCGGCATCGG
CATCCCCACCCTGGTCGCCAACGCGCTGCCCCCCGGCATGACCGTGAGCTTCCAGAGCGAGAACGGCATGCTGGGCATCG
GCCCCTTCCCCTATGAGGGCGAGGAGGACCCCGACCTCATCAACGCTGGCAAGCAGACCGTGACCGAGGTGCCGGACACC
GCCTACTTCTCCAGCTCCGATTCGTTCGCCATGATCCGTGGCGGCCACATGGACCTGTCCATCCTCGGCTCCATGCAGGT
GTCCGAGACCGGTGACATCGCCAACTGGATGGTGCCCGGCAAGATGGTGAAGGGCATGGGCGGCGCCATGGATCTGGTGG
CCGGCGCCAAGGAAGTCATCGTGCTCATGGAGCACGTGGAGAAGTCCGGCGCGCCCAAGCTGGTGGAGAAGTGCACCCTG
CCGCTCACCGGCACCAACGTGACCGACTTCGTGATCACCGATCTTGCGGTGTTCGAGTTCACCAAGCGTGGCGGCACGCT
GGTTCTTAAGGAACTGGCCCCCGGCGTCACCCTCGACGAGGTGAAGGCCAAGACCGCGGCCAAGTTCGAGGTGGGCCTCG
CCTGA

Upstream 100 bases:

>100_bases
CACACCCCCGGCATCTATGTGGACCGCATCGTCGTCAGCAAAGGCGCCGAGAAGCGGATCGAGAAGGTGACCACCCGCAA
GCGCGAAGAGGTGAAGTGAG

Downstream 100 bases:

>100_bases
GGCCTGTGCCTCTGAAGTCCTGACGATGAAGGCTCCTCCGCGCTGCGGGGGAGCCTTTTTCGTTTCCGCTCCCATGCTTA
CGCCGCAGCTTTGGCCCGCA

Product: 3-oxoacid CoA-transferase subunit B

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MAWTRDEMAARAAQQIRDGFYVNLGIGIPTLVANALPPGMTVSFQSENGMLGIGPFPYEGEEDPDLINAGKQTVTEVPDT
AYFSSSDSFAMIRGGHMDLSILGSMQVSETGDIANWMVPGKMVKGMGGAMDLVAGAKEVIVLMEHVEKSGAPKLVEKCTL
PLTGTNVTDFVITDLAVFEFTKRGGTLVLKELAPGVTLDEVKAKTAAKFEVGLA

Sequences:

>Translated_214_residues
MAWTRDEMAARAAQQIRDGFYVNLGIGIPTLVANALPPGMTVSFQSENGMLGIGPFPYEGEEDPDLINAGKQTVTEVPDT
AYFSSSDSFAMIRGGHMDLSILGSMQVSETGDIANWMVPGKMVKGMGGAMDLVAGAKEVIVLMEHVEKSGAPKLVEKCTL
PLTGTNVTDFVITDLAVFEFTKRGGTLVLKELAPGVTLDEVKAKTAAKFEVGLA
>Mature_213_residues
AWTRDEMAARAAQQIRDGFYVNLGIGIPTLVANALPPGMTVSFQSENGMLGIGPFPYEGEEDPDLINAGKQTVTEVPDTA
YFSSSDSFAMIRGGHMDLSILGSMQVSETGDIANWMVPGKMVKGMGGAMDLVAGAKEVIVLMEHVEKSGAPKLVEKCTLP
LTGTNVTDFVITDLAVFEFTKRGGTLVLKELAPGVTLDEVKAKTAAKFEVGLA

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=208, Percent_Identity=57.6923076923077, Blast_Score=246, Evalue=1e-65,
Organism=Homo sapiens, GI11545841, Length=208, Percent_Identity=56.7307692307692, Blast_Score=243, Evalue=1e-64,
Organism=Escherichia coli, GI1788552, Length=207, Percent_Identity=51.6908212560386, Blast_Score=221, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17531517, Length=209, Percent_Identity=55.5023923444976, Blast_Score=240, Evalue=4e-64,
Organism=Drosophila melanogaster, GI21358325, Length=208, Percent_Identity=58.1730769230769, Blast_Score=249, Evalue=1e-66,
Organism=Drosophila melanogaster, GI24655794, Length=208, Percent_Identity=58.1730769230769, Blast_Score=248, Evalue=2e-66,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22688; Mature: 22557

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWTRDEMAARAAQQIRDGFYVNLGIGIPTLVANALPPGMTVSFQSENGMLGIGPFPYEG
CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCEEEEECCCCEEECCCCCCCC
EEDPDLINAGKQTVTEVPDTAYFSSSDSFAMIRGGHMDLSILGSMQVSETGDIANWMVPG
CCCCHHHHCCCHHHHHCCCCEEECCCCCEEEEECCCCCEEEEECEEECCCCCCHHHCCCH
KMVKGMGGAMDLVAGAKEVIVLMEHVEKSGAPKLVEKCTLPLTGTNVTDFVITDLAVFEF
HHHHCCCCHHHHHHCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH
TKRGGTLVLKELAPGVTLDEVKAKTAAKFEVGLA
HCCCCEEEEEHHCCCCCHHHHHHHHHHEEEECCC
>Mature Secondary Structure 
AWTRDEMAARAAQQIRDGFYVNLGIGIPTLVANALPPGMTVSFQSENGMLGIGPFPYEG
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCEEEEECCCCEEECCCCCCCC
EEDPDLINAGKQTVTEVPDTAYFSSSDSFAMIRGGHMDLSILGSMQVSETGDIANWMVPG
CCCCHHHHCCCHHHHHCCCCEEECCCCCEEEEECCCCCEEEEECEEECCCCCCHHHCCCH
KMVKGMGGAMDLVAGAKEVIVLMEHVEKSGAPKLVEKCTLPLTGTNVTDFVITDLAVFEF
HHHHCCCCHHHHHHCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH
TKRGGTLVLKELAPGVTLDEVKAKTAAKFEVGLA
HCCCCEEEEEHHCCCCCHHHHHHHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]