BacMap

Definition	Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession	NC_009720
Length	5,308,934

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The map label for this gene is yecC [C]

Identifier: 154245946

GI number: 154245946

Start: 2259503

End: 2260303

Strand: Direct

Name: yecC [C]

Synonym: Xaut_2003

Alternate gene names: 154245946

Gene position: 2259503-2260303 (Clockwise)

Preceding gene: 154245937

Following gene: 154245947

Centisome position: 42.56

GC content: 73.03

Gene sequence:

>801_bases
ATGTTCACCGCTTCACGATCCGCGCGCCCCGCGCGCCCGCCGAACCGCCCCGACGCCGGCCCCCAGCCCGCCGTGGACAG
TCCCGGCCGCGTCGACGGCATGGTGCTCGACCGCGTGGTGTTGGATCGAGGCGCCCGCTCGGTCTTCGCTGGCCTGTCCC
TGACCCTGTCCGAGCGCCGCATCGGCCTTGTCGGCGACAACGGATCCGGCAAGAGCACCCTGCTGCGGCTGTTGAACGGC
CTGCTCCTGCCCGATGCAGGTACCGTCACCGTGGCCGGCCTCGACACCCGCAAGGAGCGCCGCCGCCTGCCGGCGACCGT
GGGCTTTGTGTTCCAGAACGTGGACCACCAGATCATCTTCCCCACGGTGCGGGAGGAGATCGCCTTCGGCCCCATCGCCC
AGGGCCGTCCCAAGGCCGAGGCCAACGCCGCCGCCGATCAGTTGCTGGCCCGGCACGGCTGCGCCGGCTGGGGCGAGCGG
GCGGTGGCGGACCTGTCCGAGGGCCAGAAACAGCTGGTGTGCATCCTCGCCGCCCTGGCGGCCGGGCCGCGCATCCTGCT
GCTGGACGAGCCCTTCTCCAGCCTCGACCTCACCACCCGCCTCGGCTTCGCCGCGCGGCTCGCCGACCTCGACCTCCAGG
TGGTGATGGCGAGCCACGACCTGCACCTGTTCGACGGCTTCGACCGCCTGCTGTGGCTGAAGGGCGGCATCGTCGCCGCC
GACGGGGCGCCGGGGGAGGTCATCCCGCTCTATGAGGCCGACGCCCGCGCCCGTGCCGCCGCGAACAGGGGGCAGCCGTG
A

Upstream 100 bases:

>100_bases
CTGGCCGGGCGTTGTCCTCCCTCGCGTCCGCCGGGAGCCGACCGCCCGCGATAAGGGTTTGCACCGCGCGGGGAAGCGTA
TAATCCATCCCGCACCCGCG

Downstream 100 bases:

>100_bases
TCGCCGGCTATCTCTCCGGCACCAGCCTGCTGCACCGGCTACCGGCGGGGGTGAAGCTCATCGCGCTCGGCGTGCTGTCG
CTGTTCATCCTGCCCATCGG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MFTASRSARPARPPNRPDAGPQPAVDSPGRVDGMVLDRVVLDRGARSVFAGLSLTLSERRIGLVGDNGSGKSTLLRLLNG
LLLPDAGTVTVAGLDTRKERRRLPATVGFVFQNVDHQIIFPTVREEIAFGPIAQGRPKAEANAAADQLLARHGCAGWGER
AVADLSEGQKQLVCILAALAAGPRILLLDEPFSSLDLTTRLGFAARLADLDLQVVMASHDLHLFDGFDRLLWLKGGIVAA
DGAPGEVIPLYEADARARAAANRGQP

Sequences:

>Translated_266_residues
MFTASRSARPARPPNRPDAGPQPAVDSPGRVDGMVLDRVVLDRGARSVFAGLSLTLSERRIGLVGDNGSGKSTLLRLLNG
LLLPDAGTVTVAGLDTRKERRRLPATVGFVFQNVDHQIIFPTVREEIAFGPIAQGRPKAEANAAADQLLARHGCAGWGER
AVADLSEGQKQLVCILAALAAGPRILLLDEPFSSLDLTTRLGFAARLADLDLQVVMASHDLHLFDGFDRLLWLKGGIVAA
DGAPGEVIPLYEADARARAAANRGQP
>Mature_266_residues
MFTASRSARPARPPNRPDAGPQPAVDSPGRVDGMVLDRVVLDRGARSVFAGLSLTLSERRIGLVGDNGSGKSTLLRLLNG
LLLPDAGTVTVAGLDTRKERRRLPATVGFVFQNVDHQIIFPTVREEIAFGPIAQGRPKAEANAAADQLLARHGCAGWGER
AVADLSEGQKQLVCILAALAAGPRILLLDEPFSSLDLTTRLGFAARLADLDLQVVMASHDLHLFDGFDRLLWLKGGIVAA
DGAPGEVIPLYEADARARAAANRGQP

Specific function: Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system [H]

COG id: COG1122

COG function: function code P; ABC-type cobalt transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI105990541, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI255708477, Length=225, Percent_Identity=31.1111111111111, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI9961250, Length=218, Percent_Identity=30.7339449541284, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4505771, Length=218, Percent_Identity=30.7339449541284, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI9961252, Length=218, Percent_Identity=30.7339449541284, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI47078218, Length=203, Percent_Identity=27.0935960591133, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI45446740, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI21536376, Length=163, Percent_Identity=28.8343558282209, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI116734710, Length=153, Percent_Identity=32.6797385620915, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI9665248, Length=250, Percent_Identity=29.2, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI42741659, Length=250, Percent_Identity=29.2, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI21536378, Length=232, Percent_Identity=27.1551724137931, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27881501, Length=220, Percent_Identity=26.8181818181818, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI30795238, Length=220, Percent_Identity=26.8181818181818, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1788225, Length=199, Percent_Identity=39.1959798994975, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=34.2592592592593, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081709, Length=212, Percent_Identity=30.188679245283, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789672, Length=245, Percent_Identity=31.0204081632653, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788761, Length=216, Percent_Identity=36.1111111111111, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=32.4200913242009, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87081791, Length=176, Percent_Identity=34.6590909090909, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787370, Length=218, Percent_Identity=31.651376146789, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=32.5581395348837, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787089, Length=194, Percent_Identity=32.9896907216495, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789032, Length=210, Percent_Identity=33.8095238095238, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48994943, Length=223, Percent_Identity=30.0448430493274, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790739, Length=229, Percent_Identity=30.5676855895196, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786872, Length=192, Percent_Identity=31.7708333333333, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1786703, Length=202, Percent_Identity=32.6732673267327, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786398, Length=198, Percent_Identity=32.3232323232323, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787712, Length=180, Percent_Identity=31.1111111111111, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081834, Length=205, Percent_Identity=32.1951219512195, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789891, Length=228, Percent_Identity=32.0175438596491, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786345, Length=214, Percent_Identity=31.7757009345794, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=31.390134529148, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=27.7310924369748, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789873, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=31.1627906976744, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081782, Length=190, Percent_Identity=26.8421052631579, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787105, Length=201, Percent_Identity=29.8507462686567, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790190, Length=199, Percent_Identity=29.1457286432161, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788644, Length=208, Percent_Identity=30.7692307692308, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786253, Length=156, Percent_Identity=34.6153846153846, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=235, Percent_Identity=30.2127659574468, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788506, Length=231, Percent_Identity=29.8701298701299, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790544, Length=208, Percent_Identity=28.3653846153846, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786319, Length=165, Percent_Identity=29.6969696969697, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=152, Percent_Identity=34.2105263157895, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI193208177, Length=206, Percent_Identity=31.5533980582524, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=221, Percent_Identity=31.2217194570136, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=226, Percent_Identity=27.8761061946903, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=205, Percent_Identity=30.2439024390244, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=172, Percent_Identity=31.9767441860465, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648314, Length=160, Percent_Identity=32.5, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17136662, Length=215, Percent_Identity=31.1627906976744, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281363262, Length=212, Percent_Identity=32.0754716981132, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24653245, Length=212, Percent_Identity=32.0754716981132, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28571209, Length=187, Percent_Identity=26.2032085561497, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24666092, Length=198, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28573573, Length=168, Percent_Identity=29.7619047619048, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28573571, Length=168, Percent_Identity=29.7619047619048, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI85726357, Length=197, Percent_Identity=34.010152284264, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28231; Mature: 28231

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTASRSARPARPPNRPDAGPQPAVDSPGRVDGMVLDRVVLDRGARSVFAGLSLTLSERR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCEEEECCCE
IGLVGDNGSGKSTLLRLLNGLLLPDAGTVTVAGLDTRKERRRLPATVGFVFQNVDHQIIF
EEEEECCCCCHHHHHHHHHCEECCCCCEEEEEECCCHHHHHCCCHHHHHHHHCCCCEEEC
PTVREEIAFGPIAQGRPKAEANAAADQLLARHGCAGWGERAVADLSEGQKQLVCILAALA
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHH
AGPRILLLDEPFSSLDLTTRLGFAARLADLDLQVVMASHDLHLFDGFDRLLWLKGGIVAA
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEHHHHHHHEEEECCEEEE
DGAPGEVIPLYEADARARAAANRGQP
CCCCCCEEEEECCCHHHHHHHCCCCC
>Mature Secondary Structure
MFTASRSARPARPPNRPDAGPQPAVDSPGRVDGMVLDRVVLDRGARSVFAGLSLTLSERR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCEEEECCCE
IGLVGDNGSGKSTLLRLLNGLLLPDAGTVTVAGLDTRKERRRLPATVGFVFQNVDHQIIF
EEEEECCCCCHHHHHHHHHCEECCCCCEEEEEECCCHHHHHCCCHHHHHHHHCCCCEEEC
PTVREEIAFGPIAQGRPKAEANAAADQLLARHGCAGWGERAVADLSEGQKQLVCILAALA
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHH
AGPRILLLDEPFSSLDLTTRLGFAARLADLDLQVVMASHDLHLFDGFDRLLWLKGGIVAA
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEHHHHHHHEEEECCEEEE
DGAPGEVIPLYEADARARAAANRGQP
CCCCCCEEEEECCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]