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The map label for this gene is potD [C]

Identifier: 154244807

GI number: 154244807

Start: 955818

End: 956885

Strand: Direct

Name: potD [C]

Synonym: Xaut_0857

Alternate gene names: 154244807

Gene position: 955818-956885 (Clockwise)

Preceding gene: 154244806

Following gene: 154244808

Centisome position: 18.0

GC content: 63.95

Gene sequence:

>1068_bases
ATGACGAAGACTGATCTCACCCTTTCGGGTGCGCCCTCCCGGCGTGCCGTCCTCGGAGCGCTCGGTGCGGGGGCGGCGGT
GCTCGCCGCCCCGCGCCTTGCCCGTGCGCAGGAGGGCACCCTCGTCGTCTCCAACTGGGGCGGTGACTGGAACGAGCGGA
CCATCCGCTTCGTGGAAGCGCCGCTGGTGGAAAGCCGCGGCATCAAGATCGTCCGCGACCTCGGCATGGAGCCGGAGCGC
AAGGCCAAGCTGATCGCCGAGAAGCGGCTCAAGCGTGGCACCATCGACGTCATCCATATCAACGAGGGCGACAGCGTGGA
GCTGAACGCTCAGGACGTGCTGAGCGACATCGATTTTTCCAAGGTGCCCAATTACGCCGACGTGGTGCCGGCGCTCAAAT
CCAAGCCCTTCTTCGTGCCGTGGCTCTACAGCGGCGTCACGATCATCTACAACAAGGACAAGGTGCCGAACCCGCCCAAG
TCCTATGAGGAGCTGTGGGACAAGAAGTGGGCCGGCAAGATCGGCCTCACCAACCAGCTTTACTTCAACTACATCATGAT
GGCCGGCCTGATCAAAGGCGGCAATGTCACCAATACAGAGCAGGGCAAGGAACGGCTGATCCAGCTGAAGGAGCTGACCC
AGCCGCGCATCTATGCCGCCCACCAGCAGCTCGGCGCCGGCCTCGTCAATGGCGAGGTGGACATTGCGGTGAACTACAAG
GCGCGCGGCCTGCAATGGGCCAATGACGGGGCGCCGCTGGCCATCCAATATCCGACCGAAGGCGCCATCGCGGTCATGTT
CGGTGCCGCCCTGCCCAAGCGCGCGCCGAGCCCGGACCTCGCCAATATCTATTTCAACGCCATGCTGGACAGGAAAGCCA
TGGCGGGCCTTGCCGGCGCCAGCTTCTACGCCCCGGCCAATTCCAAGGCGGAGCTTTCCGACGAGCTGCGCGCCAAGGTG
GACTTCACGGCGGCGCAGGCGGCGGCGCTGAAATTCCCCGATTATGCCCACGTGGCCAAGAATACGGCGGAATGGCTCGA
GTGGTGGAACAAGAACATCGCCCGCTGA

Upstream 100 bases:

>100_bases
GCCTGATCGGGTCGCCGCGCTCCGGTGCGGCGACTTCCAGACCTTCTCCGACATCGACGACTTCGACTTCGACATCAAAA
AATAAAATCCAGAGGCGGAC

Downstream 100 bases:

>100_bases
GCGCGGTCGGCATGTCGGGTTCGGCCATGTCCACGGCAACGACCAGCCCTGGCGGTGCCAGCGCGCCGCCCCTCAAGCTT
CCCGCGCCGGGTGCGCGGGA

Product: extracellular solute-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: Spermidine/Putrescine ABC Transporter; ABC Transporter; ABC Transporter Periplasmic Protein; Polyamine ABC Transporter

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MTKTDLTLSGAPSRRAVLGALGAGAAVLAAPRLARAQEGTLVVSNWGGDWNERTIRFVEAPLVESRGIKIVRDLGMEPER
KAKLIAEKRLKRGTIDVIHINEGDSVELNAQDVLSDIDFSKVPNYADVVPALKSKPFFVPWLYSGVTIIYNKDKVPNPPK
SYEELWDKKWAGKIGLTNQLYFNYIMMAGLIKGGNVTNTEQGKERLIQLKELTQPRIYAAHQQLGAGLVNGEVDIAVNYK
ARGLQWANDGAPLAIQYPTEGAIAVMFGAALPKRAPSPDLANIYFNAMLDRKAMAGLAGASFYAPANSKAELSDELRAKV
DFTAAQAAALKFPDYAHVAKNTAEWLEWWNKNIAR

Sequences:

>Translated_355_residues
MTKTDLTLSGAPSRRAVLGALGAGAAVLAAPRLARAQEGTLVVSNWGGDWNERTIRFVEAPLVESRGIKIVRDLGMEPER
KAKLIAEKRLKRGTIDVIHINEGDSVELNAQDVLSDIDFSKVPNYADVVPALKSKPFFVPWLYSGVTIIYNKDKVPNPPK
SYEELWDKKWAGKIGLTNQLYFNYIMMAGLIKGGNVTNTEQGKERLIQLKELTQPRIYAAHQQLGAGLVNGEVDIAVNYK
ARGLQWANDGAPLAIQYPTEGAIAVMFGAALPKRAPSPDLANIYFNAMLDRKAMAGLAGASFYAPANSKAELSDELRAKV
DFTAAQAAALKFPDYAHVAKNTAEWLEWWNKNIAR
>Mature_354_residues
TKTDLTLSGAPSRRAVLGALGAGAAVLAAPRLARAQEGTLVVSNWGGDWNERTIRFVEAPLVESRGIKIVRDLGMEPERK
AKLIAEKRLKRGTIDVIHINEGDSVELNAQDVLSDIDFSKVPNYADVVPALKSKPFFVPWLYSGVTIIYNKDKVPNPPKS
YEELWDKKWAGKIGLTNQLYFNYIMMAGLIKGGNVTNTEQGKERLIQLKELTQPRIYAAHQQLGAGLVNGEVDIAVNYKA
RGLQWANDGAPLAIQYPTEGAIAVMFGAALPKRAPSPDLANIYFNAMLDRKAMAGLAGASFYAPANSKAELSDELRAKVD
FTAAQAAALKFPDYAHVAKNTAEWLEWWNKNIAR

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38908; Mature: 38777

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTDLTLSGAPSRRAVLGALGAGAAVLAAPRLARAQEGTLVVSNWGGDWNERTIRFVEA
CCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEC
PLVESRGIKIVRDLGMEPERKAKLIAEKRLKRGTIDVIHINEGDSVELNAQDVLSDIDFS
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECHHHHHHHCCHH
KVPNYADVVPALKSKPFFVPWLYSGVTIIYNKDKVPNPPKSYEELWDKKWAGKIGLTNQL
HCCCHHHHHHHHCCCCCEEEEHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHH
YFNYIMMAGLIKGGNVTNTEQGKERLIQLKELTQPRIYAAHQQLGAGLVNGEVDIAVNYK
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEECCEEEEEEEEE
ARGLQWANDGAPLAIQYPTEGAIAVMFGAALPKRAPSPDLANIYFNAMLDRKAMAGLAGA
ECCCEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
SFYAPANSKAELSDELRAKVDFTAAQAAALKFPDYAHVAKNTAEWLEWWNKNIAR
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKTDLTLSGAPSRRAVLGALGAGAAVLAAPRLARAQEGTLVVSNWGGDWNERTIRFVEA
CCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEC
PLVESRGIKIVRDLGMEPERKAKLIAEKRLKRGTIDVIHINEGDSVELNAQDVLSDIDFS
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECHHHHHHHCCHH
KVPNYADVVPALKSKPFFVPWLYSGVTIIYNKDKVPNPPKSYEELWDKKWAGKIGLTNQL
HCCCHHHHHHHHCCCCCEEEEHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHH
YFNYIMMAGLIKGGNVTNTEQGKERLIQLKELTQPRIYAAHQQLGAGLVNGEVDIAVNYK
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEECCEEEEEEEEE
ARGLQWANDGAPLAIQYPTEGAIAVMFGAALPKRAPSPDLANIYFNAMLDRKAMAGLAGA
ECCCEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
SFYAPANSKAELSDELRAKVDFTAAQAAALKFPDYAHVAKNTAEWLEWWNKNIAR
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA