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The map label for this gene is intA [H]

Identifier: 153951818

GI number: 153951818

Start: 971341

End: 972540

Strand: Direct

Name: intA [H]

Synonym: JJD26997_1101

Alternate gene names: 153951818

Gene position: 971341-972540 (Clockwise)

Preceding gene: 153951843

Following gene: 153952237

Centisome position: 52.64

GC content: 27.83

Gene sequence:

>1200_bases
GTGCTAAACGATACCAAAATAAAAGCCTTAAAAGCTAAAGACAAAAAATACTATATTGCTGATTTTGACAACCTACTTCT
TTGTATTTATCCGAGCGGTAAGAAAACTTTTATATTTAATTATAAATGTCCTAAAACTTTAAGATACAAAAGAATAACTC
TAGGAGAATACCCTACTCTTAATCTTGCTAACGCTAGAAAACAAAGAGATAATCTAAAAGTAAATTTAGCTGAAAATGAC
AGTATAAGAGAAAAGTCTGAAATAACATTTAAAGAATTAGCATTGGAAAAAATGGAGCTTAAAAAACTTGAATTAAGCGA
AAAAACCTACAAAAGCTATGTAAGCTATTTGCAAAGATTTGCTTTTGGAATTTATGGAGAAATTATATTAGATAAATTGC
AAATCAAGGATATTTTAAAAAGTTTTGAAAAATTTAGAAAAGAAAATATAAGAGAAGGTGCCGATAAGTTCTTTACTCTT
TTAAATGAAATTTTTAGACATGGTGTTATAAAAGAATATATTAAAAGTAACCCCATGGCAAATCTAAATAGAAAAGAATT
GCTTATAAATAAAGCGAGTAAAAATCATGCCACCTTGTTAGAAACTAAAGAAATTAAAGCATTAGTAGATAATATAATTG
ATTATAAAGGATATATTAGTGTAAAAATTGCAGCAATGTTTTCTTTATTAACTGCACAAAGAAGCTTTAGTATAAGAAGT
GCAAAATGGGAAGATATTGATTTGGAAAATGGTATTTGGTATATACCGCAAGAAGATATGAAAATGAAAAGAGCGCATAC
TATACCTTTAAATTCTCAATGTGTATATATGCTTAAAAAATACAAAGAGATGAGTATTAATACGGGTTATTTATTTTATA
GTTTAAGAAGTAAAAGTGAAATTATAAGCGATAACACAATTAGATCCATGTTTAGAAGAATGGGCTACTCTAATGATGAT
TTTACACCACATGGCTTTCGCGCTATGTTTAGCACCCTAGCCCATGAAAATAGAAATAAACACCAAATGAGTAGCGATAT
TATAGAATTGTGTTTAGCGCATGTAGAAAAAAATAAAATTAAATCTGCATATAATCATGCTTTAAATTTGAAGGAAAAAG
CTATCCTTATGCAGTGGTGGGGAGATTATCTTGATGAGATTGCTGAACTAAATCAACAAGTCCGAAATATTTTTTTATAA

Upstream 100 bases:

>100_bases
AATTTATTTTAATTTATTATACTTGCAGATATTTTTTATTGACTTTGTTATTGACCTAGTTAAAATTTGCTATTGACCTT
ATTGACCTAAAGGAGTAAAA

Downstream 100 bases:

>100_bases
AATTTTCAATATCTTGTTTAGGATACAATCCCGAACAATTTCTATGTTGTTTAAACTCTCTAAATTTGCCTTGTTTGGCG
TATTTGTGAACTATAGGCTC

Product: site-specific recombinase phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTLNLANARKQRDNLKVNLAEND
SIREKSEITFKELALEKMELKKLELSEKTYKSYVSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTL
LNEIFRHGVIKEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLLTAQRSFSIRS
AKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTGYLFYSLRSKSEIISDNTIRSMFRRMGYSNDD
FTPHGFRAMFSTLAHENRNKHQMSSDIIELCLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIAELNQQVRNIFL

Sequences:

>Translated_399_residues
MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTLNLANARKQRDNLKVNLAEND
SIREKSEITFKELALEKMELKKLELSEKTYKSYVSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTL
LNEIFRHGVIKEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLLTAQRSFSIRS
AKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTGYLFYSLRSKSEIISDNTIRSMFRRMGYSNDD
FTPHGFRAMFSTLAHENRNKHQMSSDIIELCLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIAELNQQVRNIFL
>Mature_399_residues
MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTLNLANARKQRDNLKVNLAEND
SIREKSEITFKELALEKMELKKLELSEKTYKSYVSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTL
LNEIFRHGVIKEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLLTAQRSFSIRS
AKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTGYLFYSLRSKSEIISDNTIRSMFRRMGYSNDD
FTPHGFRAMFSTLAHENRNKHQMSSDIIELCLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIAELNQQVRNIFL

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=394, Percent_Identity=27.9187817258883, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1788690, Length=405, Percent_Identity=28.8888888888889, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI145693166, Length=399, Percent_Identity=28.0701754385965, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46982; Mature: 46982

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTL
CCCCCHHHEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCCCCCEEEEECCCCCCC
NLANARKQRDNLKVNLAENDSIREKSEITFKELALEKMELKKLELSEKTYKSYVSYLQRF
CHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTLLNEIFRHGVIKEYIKSNPMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLLTAQRSFSIRS
CCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
AKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTGYLFYSLRSKSE
CCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHH
IISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLAHENRNKHQMSSDIIELCLAHVEKNKI
HHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
KSAYNHALNLKEKAILMQWWGDYLDEIAELNQQVRNIFL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTL
CCCCCHHHEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCCCCCEEEEECCCCCCC
NLANARKQRDNLKVNLAENDSIREKSEITFKELALEKMELKKLELSEKTYKSYVSYLQRF
CHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTLLNEIFRHGVIKEYIKSNPMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLLTAQRSFSIRS
CCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
AKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTGYLFYSLRSKSE
CCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHH
IISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLAHENRNKHQMSSDIIELCLAHVEKNKI
HHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
KSAYNHALNLKEKAILMQWWGDYLDEIAELNQQVRNIFL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]