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The map label for this gene is psd [H]

Identifier: 153950980

GI number: 153950980

Start: 877220

End: 878020

Strand: Direct

Name: psd [H]

Synonym: JJD26997_0997

Alternate gene names: 153950980

Gene position: 877220-878020 (Clockwise)

Preceding gene: 153951603

Following gene: 153952430

Centisome position: 47.54

GC content: 29.96

Gene sequence:

>801_bases
ATGAGTTTTTCAAAAGAAAGTTCAAGGCTTTTTGGCTTTGTAGTAGGGGTTAAATTTCCTAAATTTATACAAAAAGTCAT
CAATGAAAATTATGTTAAGTATTTTAATATCGATATGAGCGAATTTAAAGCTCCTTGTGAATATGAGAGTTTAAATGCTC
TTTTTACAAGAACTTTACAAATTCCAAGAAAACTTGAAGAAGGTTTTATTAGTCCAAGCGATGGTAAAATTCTAGAGTGT
GGAAGTACTTTTTTGGCCAATGAAGAGCATTTTGCTTTTTCTATAAAAGGGCATACTTATAGCGTTGAGGAGCTTTTAAA
AGATAGCTTTGAAGAAGATGAACTTAAAAATGGACTTGATTATGTTAATATCTATCTTTCTCCAAAAGATTATCATCGCT
ATCACAGCCCTTGTGATATGCAAATTTTAAGCGTAACTTACACAAGCGGAGCACTCTATAGTGTAAATGAAAAGCATTTA
GAGCGCATTAGCAATTTATATGTAAAAAATGAAAGAGTGAGCTTGAAATGTCAAAATAAAAAAGGTATTTTTTGGCTTGT
TTTTGTGGGGGCACAAAATGTAGGAAAAATGCGTTTTAATTTTGATACAAGCATACAAACCAATGCTAAAATTTCTCATA
ATTTTGTTAGAAAATATGAAAATTTAAATTTAAAAAAAGGTGAAGAACTAGGAAATTTCGAACTAGGTTCTACTATAGTT
TTAATCTCTCAAAAAGGGCTTTTAAATTTTAATTTAAAAGCAGGGCAGGGTGTTAAATTTGGAGAAAAAATAGCGGATTA
G

Upstream 100 bases:

>100_bases
AAACCAAGTTTTATGTGAGTAGTGGAGCAGGATTTTGGGGGCCAAGTCTTAGAGTTTTTGCTCCGAGTGAAATAGTGATC
TTAAATTTAAAGGGAAAAAA

Downstream 100 bases:

>100_bases
TTTTTGGGAGTTTTATTTACCATTTGATAGATAAAGGCAAAAACTTCAGCTACAGCTTTATACATATTAGGTGGAATTTC
ATCACCTAAGTCAAGCTTGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSFSKESSRLFGFVVGVKFPKFIQKVINENYVKYFNIDMSEFKAPCEYESLNALFTRTLQIPRKLEEGFISPSDGKILEC
GSTFLANEEHFAFSIKGHTYSVEELLKDSFEEDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSVTYTSGALYSVNEKHL
ERISNLYVKNERVSLKCQNKKGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFVRKYENLNLKKGEELGNFELGSTIV
LISQKGLLNFNLKAGQGVKFGEKIAD

Sequences:

>Translated_266_residues
MSFSKESSRLFGFVVGVKFPKFIQKVINENYVKYFNIDMSEFKAPCEYESLNALFTRTLQIPRKLEEGFISPSDGKILEC
GSTFLANEEHFAFSIKGHTYSVEELLKDSFEEDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSVTYTSGALYSVNEKHL
ERISNLYVKNERVSLKCQNKKGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFVRKYENLNLKKGEELGNFELGSTIV
LISQKGLLNFNLKAGQGVKFGEKIAD
>Mature_265_residues
SFSKESSRLFGFVVGVKFPKFIQKVINENYVKYFNIDMSEFKAPCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECG
STFLANEEHFAFSIKGHTYSVEELLKDSFEEDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSVTYTSGALYSVNEKHLE
RISNLYVKNERVSLKCQNKKGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFVRKYENLNLKKGEELGNFELGSTIVL
ISQKGLLNFNLKAGQGVKFGEKIAD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=295, Percent_Identity=35.2542372881356, Blast_Score=137, Evalue=1e-32,
Organism=Escherichia coli, GI1790604, Length=275, Percent_Identity=30.1818181818182, Blast_Score=120, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71980843, Length=274, Percent_Identity=31.021897810219, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71980840, Length=272, Percent_Identity=30.5147058823529, Blast_Score=112, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6324160, Length=161, Percent_Identity=38.5093167701863, Blast_Score=99, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6321609, Length=221, Percent_Identity=27.6018099547511, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24649526, Length=298, Percent_Identity=29.8657718120805, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24649528, Length=298, Percent_Identity=29.8657718120805, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24649524, Length=298, Percent_Identity=29.8657718120805, Blast_Score=117, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 30508; Mature: 30377

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSKESSRLFGFVVGVKFPKFIQKVINENYVKYFNIDMSEFKAPCEYESLNALFTRTLQ
CCCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHH
IPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSVEELLKDSFEEDELKNGLD
HHHHHHHCCCCCCCCCEEECCCHHCCCCCEEEEEECCCEECHHHHHHCCCCHHHHHCCCE
YVNIYLSPKDYHRYHSPCDMQILSVTYTSGALYSVNEKHLERISNLYVKNERVSLKCQNK
EEEEEECCHHHHHCCCCCCEEEEEEEECCCEEEECCHHHHHHHHHHEEECCEEEEEECCC
KGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFVRKYENLNLKKGEELGNFELGSTIV
CCEEEEEEECCCCCCEEEEEECCCEECCCCHHHHHHHHHHCCCCCCCCCCCCEECCCEEE
LISQKGLLNFNLKAGQGVKFGEKIAD
EEECCCEEEEEECCCCCCCCHHHHCC
>Mature Secondary Structure 
SFSKESSRLFGFVVGVKFPKFIQKVINENYVKYFNIDMSEFKAPCEYESLNALFTRTLQ
CCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHH
IPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSVEELLKDSFEEDELKNGLD
HHHHHHHCCCCCCCCCEEECCCHHCCCCCEEEEEECCCEECHHHHHHCCCCHHHHHCCCE
YVNIYLSPKDYHRYHSPCDMQILSVTYTSGALYSVNEKHLERISNLYVKNERVSLKCQNK
EEEEEECCHHHHHCCCCCCEEEEEEEECCCEEEECCHHHHHHHHHHEEECCEEEEEECCC
KGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFVRKYENLNLKKGEELGNFELGSTIV
CCEEEEEEECCCCCCEEEEEECCCEECCCCHHHHHHHHHHCCCCCCCCCCCCEECCCEEE
LISQKGLLNFNLKAGQGVKFGEKIAD
EEECCCEEEEEECCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]