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The map label for this gene is cspA [H]

Identifier: 153936819

GI number: 153936819

Start: 1480013

End: 1480216

Strand: Reverse

Name: cspA [H]

Synonym: CLC_1422

Alternate gene names: 153936819

Gene position: 1480216-1480013 (Counterclockwise)

Preceding gene: 153935582

Following gene: 153937171

Centisome position: 39.36

GC content: 35.29

Gene sequence:

>204_bases
ATGAAAACTGGAACAGTAAAATGGTTTAACTCAGAAAAAGGATTTGGATTTATAGAAGTAGAAGGCGAAAAAGACGTATT
CGTTCACTTCTCAGCAATCCAAGGAGATGAGCCAAGAAAAAACCTTGAAGAAGGACAAAAAGTTCAATTCGAAGTAGAAG
AAGGTCAAAAAGGTCCTCAAGCTGCTAATGTTATAAAGCTATAA

Upstream 100 bases:

>100_bases
AACATAGCATTTATATTTGTCTATTTGTTAATAATATGTTATAATAATAGAATAAAATTTAATTAGTAAAGCATGATGTT
TTACACTAGGAGGTCAATCA

Downstream 100 bases:

>100_bases
TATAACTTTGTAATATATAATATATTAAATATTTTAATATATAAATAGCAAATACCACGCCACCTTTATTAAGGTGGTTT
TTATATTATATAAAATTTTT

Product: major cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MKTGTVKWFNSEKGFGFIEVEGEKDVFVHFSAIQGDEPRKNLEEGQKVQFEVEEGQKGPQAANVIKL

Sequences:

>Translated_67_residues
MKTGTVKWFNSEKGFGFIEVEGEKDVFVHFSAIQGDEPRKNLEEGQKVQFEVEEGQKGPQAANVIKL
>Mature_67_residues
MKTGTVKWFNSEKGFGFIEVEGEKDVFVHFSAIQGDEPRKNLEEGQKVQFEVEEGQKGPQAANVIKL

Specific function: Involved in cold stress response [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=53.030303030303, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=53.030303030303, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=53.030303030303, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=70.3125, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=63.6363636363636, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=65.1515151515152, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=66.1538461538461, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=63.0769230769231, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=60.6060606060606, Blast_Score=76, Evalue=5e-16,
Organism=Escherichia coli, GI1787107, Length=68, Percent_Identity=51.4705882352941, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7542; Mature: 7542

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGTVKWFNSEKGFGFIEVEGEKDVFVHFSAIQGDEPRKNLEEGQKVQFEVEEGQKGPQ
CCCCCEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCC
AANVIKL
CCEEECC
>Mature Secondary Structure
MKTGTVKWFNSEKGFGFIEVEGEKDVFVHFSAIQGDEPRKNLEEGQKVQFEVEEGQKGPQ
CCCCCEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCC
AANVIKL
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA