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The map label for this gene is msmR [H]

Identifier: 153936100

GI number: 153936100

Start: 1700560

End: 1701549

Strand: Direct

Name: msmR [H]

Synonym: CLC_1627

Alternate gene names: 153936100

Gene position: 1700560-1701549 (Clockwise)

Preceding gene: 153937066

Following gene: 153937773

Centisome position: 45.22

GC content: 24.95

Gene sequence:

>990_bases
TTGAAAACTAAAAAAAACATTGTAGATATGTATGATGAATATATTAAGGAAGAGTTCAAATGTAAAACTTCAGATGAGCT
CTTAGGCAAAAAGTATGTTATTGGAAAACAATTTGGCGTAGGAGATTATTCAAGAATGAAAATAGAAGATGGATTAGAAA
TTTCAAAGTTTAATATGTATTCAGCGAATATGTATTTTGATAATAGAGGATATGAAGATGATGTTTTAGAAATAGGGTAT
TGTTATAGTGGAACTACGAAAATTTTAGCTTTTCCTAGTAACAAAAAGTATCTGCTTAAAGAAGGGCAAATTTTTTTTTA
TAAAACATTAAATAATGTAGAATATTTTGAGTTTAAATATGATAAATGTAAAACCATATCAATTTGTATGCATTTTAGCA
CCATTAAAAATGCAGTAAATCCAATATGGGAAGATAGAGCTATAATGGATTGGGAAACACAAATGAATAACATATTTAAA
GAAGATATATTAATAATTGAAAAAGCTAGTTATGATATAAAAAAGATAGCAGAAGAAATAGATGATATTCCAATTGATAA
TATGATGGGATATATGAAACTTAAGCTAAGGACAATAGAATTTTTGGCTAATTTTTTTGAAAAAAATTCTGACATAAAAT
TAATACAAAGTTCAGAAGATGAGGAAAGAGAGAGTATAATTAAGGCTAAGAATATAATAAGCAAAAACCTCCGAGAGCCT
CCATCACTTAAGAAATTAGCTGGTGATTTGAATATAAGTTTATATAAATTACAAAAAGCTTTTAAAAATAGTACTGGAAA
TACAGTCTATGAATATATAAAGAAATCAAGAATTGAAAAGGCAAAATATTTATTAAAGAATACAAACATGTCAATTTTAG
AAATTGCAAATGAAATAGGCTATGAAAATCCAAGTAAGTTCTCAAATGCTTTTAAAGGCTATAATAATATGAATCCATTA
AAATATAGAAAATTAAATAAATCTGTATAA

Upstream 100 bases:

>100_bases
GAAAGAAAATACCATATAATCTATATGAAATGAAAATTAGAATCAAAATCAATTAAAGTAAATATCGTAGTATTGTTTAG
ATTGAATAGGGGGTTGAACT

Downstream 100 bases:

>100_bases
AAAATAATAAACTATAAAAATGTTCTAAAGTGATTTTTTGGAGCATTTTTTATTTTTTTTGGAGTGGAAAATGAAAATGA
TTTTCAATTATAATTAGTTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKTKKNIVDMYDEYIKEEFKCKTSDELLGKKYVIGKQFGVGDYSRMKIEDGLEISKFNMYSANMYFDNRGYEDDVLEIGY
CYSGTTKILAFPSNKKYLLKEGQIFFYKTLNNVEYFEFKYDKCKTISICMHFSTIKNAVNPIWEDRAIMDWETQMNNIFK
EDILIIEKASYDIKKIAEEIDDIPIDNMMGYMKLKLRTIEFLANFFEKNSDIKLIQSSEDEERESIIKAKNIISKNLREP
PSLKKLAGDLNISLYKLQKAFKNSTGNTVYEYIKKSRIEKAKYLLKNTNMSILEIANEIGYENPSKFSNAFKGYNNMNPL
KYRKLNKSV

Sequences:

>Translated_329_residues
MKTKKNIVDMYDEYIKEEFKCKTSDELLGKKYVIGKQFGVGDYSRMKIEDGLEISKFNMYSANMYFDNRGYEDDVLEIGY
CYSGTTKILAFPSNKKYLLKEGQIFFYKTLNNVEYFEFKYDKCKTISICMHFSTIKNAVNPIWEDRAIMDWETQMNNIFK
EDILIIEKASYDIKKIAEEIDDIPIDNMMGYMKLKLRTIEFLANFFEKNSDIKLIQSSEDEERESIIKAKNIISKNLREP
PSLKKLAGDLNISLYKLQKAFKNSTGNTVYEYIKKSRIEKAKYLLKNTNMSILEIANEIGYENPSKFSNAFKGYNNMNPL
KYRKLNKSV
>Mature_329_residues
MKTKKNIVDMYDEYIKEEFKCKTSDELLGKKYVIGKQFGVGDYSRMKIEDGLEISKFNMYSANMYFDNRGYEDDVLEIGY
CYSGTTKILAFPSNKKYLLKEGQIFFYKTLNNVEYFEFKYDKCKTISICMHFSTIKNAVNPIWEDRAIMDWETQMNNIFK
EDILIIEKASYDIKKIAEEIDDIPIDNMMGYMKLKLRTIEFLANFFEKNSDIKLIQSSEDEERESIIKAKNIISKNLREP
PSLKKLAGDLNISLYKLQKAFKNSTGNTVYEYIKKSRIEKAKYLLKNTNMSILEIANEIGYENPSKFSNAFKGYNNMNPL
KYRKLNKSV

Specific function: Regulatory protein for the msm operon for multiple sugar metabolism. Activates the transcription of the msmEFGK, aga, dexB and gftA genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38651; Mature: 38651

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKKNIVDMYDEYIKEEFKCKTSDELLGKKYVIGKQFGVGDYSRMKIEDGLEISKFNMY
CCCHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCCEEEECCCCEEEEEEEE
SANMYFDNRGYEDDVLEIGYCYSGTTKILAFPSNKKYLLKEGQIFFYKTLNNVEYFEFKY
EEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCEEEEEECCCCEEEEEEC
DKCKTISICMHFSTIKNAVNPIWEDRAIMDWETQMNNIFKEDILIIEKASYDIKKIAEEI
CCCCEEHHHHHHHHHHHHHCCHHCCCCEECHHHHHHHHHHHHEEEEECCCCCHHHHHHHH
DDIPIDNMMGYMKLKLRTIEFLANFFEKNSDIKLIQSSEDEERESIIKAKNIISKNLREP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC
PSLKKLAGDLNISLYKLQKAFKNSTGNTVYEYIKKSRIEKAKYLLKNTNMSILEIANEIG
CCHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
YENPSKFSNAFKGYNNMNPLKYRKLNKSV
CCCHHHHHHHHCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure
MKTKKNIVDMYDEYIKEEFKCKTSDELLGKKYVIGKQFGVGDYSRMKIEDGLEISKFNMY
CCCHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCCEEEECCCCEEEEEEEE
SANMYFDNRGYEDDVLEIGYCYSGTTKILAFPSNKKYLLKEGQIFFYKTLNNVEYFEFKY
EEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCEEEEEECCCCEEEEEEC
DKCKTISICMHFSTIKNAVNPIWEDRAIMDWETQMNNIFKEDILIIEKASYDIKKIAEEI
CCCCEEHHHHHHHHHHHHHCCHHCCCCEECHHHHHHHHHHHHEEEEECCCCCHHHHHHHH
DDIPIDNMMGYMKLKLRTIEFLANFFEKNSDIKLIQSSEDEERESIIKAKNIISKNLREP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC
PSLKKLAGDLNISLYKLQKAFKNSTGNTVYEYIKKSRIEKAKYLLKNTNMSILEIANEIG
CCHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
YENPSKFSNAFKGYNNMNPLKYRKLNKSV
CCCHHHHHHHHCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]