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The map label for this gene is yqgF [C]

Identifier: 153933531

GI number: 153933531

Start: 2612323

End: 2612736

Strand: Reverse

Name: yqgF [C]

Synonym: CLB_2503

Alternate gene names: 153933531

Gene position: 2612736-2612323 (Counterclockwise)

Preceding gene: 153931510

Following gene: 153932529

Centisome position: 67.63

GC content: 32.13

Gene sequence:

>414_bases
ATGAGAATATTAGGTCTAGATATAGGTGATAGAACTATTGGAATCGCCATAAGTGATCCATTAGGTTTTACAGCACAGGG
AATTACAACTATAAGAAGAAAAAGCGAGGCATATGATTTAGAAGAGATAAAAAAAATATGTGATAAATATGAAGTGGATA
CTATAGTATCAGGGCTTCCTAAGAATATGAATGGTACATTAGGGCCGCAAAGTGAAAAGGTTCTAGAGTTTTGTGATTTA
ATAAAAGAACATTTAAATATTGAAATAAAAATGTGGGATGAGAGATTAACGACTGTAGCAGCTACTAGAGCTATGCTAGA
GGCGGATTTATCTCGCTCAAAGAGGAAAAAAATAGTAGATAAAGTAGCTGCTACTTATATATTACAAGGATACTTAGATA
GTTTATCAAAATAA

Upstream 100 bases:

>100_bases
GGAGTTTAGTATAAAGAGAATACAAATGTAGGATTTAAAGATGATGACTTACTCCGATGATATAGGAGTTTGATATAAAT
ACAATACTTAGGAGAGATTT

Downstream 100 bases:

>100_bases
GGAGGATAATGATATGGATAATAATGTAGATACAATAACTTTAACGGATGAAGAAGGAAAAGAAACTGAATTTGAGGTAA
TAACAAAGCTTGATATAGAA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNMNGTLGPQSEKVLEFCDL
IKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVDKVAATYILQGYLDSLSK

Sequences:

>Translated_137_residues
MRILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNMNGTLGPQSEKVLEFCDL
IKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVDKVAATYILQGYLDSLSK
>Mature_137_residues
MRILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNMNGTLGPQSEKVLEFCDL
IKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVDKVAATYILQGYLDSLSK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=31.2977099236641, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CLOB1 (A7FWJ3)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384804.1
- ProteinModelPortal:   A7FWJ3
- SMR:   A7FWJ3
- STRING:   A7FWJ3
- GeneID:   5396584
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_2503
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   CBOT441770:CLB_2503-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15361; Mature: 15361

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLP
CEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
KNMNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD
CCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVAATYILQGYLDSLSK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLP
CEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
KNMNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD
CCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVAATYILQGYLDSLSK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA