Click here to switch to the map view.

The map label for this gene is virD4 [H]

Identifier: 153933509

GI number: 153933509

Start: 2554836

End: 2556458

Strand: Reverse

Name: virD4 [H]

Synonym: CLB_2425

Alternate gene names: 153933509

Gene position: 2556458-2554836 (Counterclockwise)

Preceding gene: 153932716

Following gene: 153934332

Centisome position: 66.17

GC content: 29.27

Gene sequence:

>1623_bases
ATGTTATCTTTATTAGCAAGCACCGCATTAATTGGAGGAAGCACTATAGCAGCAGAATTACTGGGATTAAAACTAAAGAA
TAAGAAAAATAAAATAGATAATTTAGCAAATGCAAAACTCTCTACTAAAGAAGATCTAGAAAATATCTTAGGAAATTACT
TACAACTTTCTAAAAACATTAAACTAAAAGAGAAAATGGGATTTGAGGGAAGTGTAACTGTAGCTCCAACAGGTGGAGGA
AAAACAACATCTTATTTTATTCCTAACTTATTAAATTCTAACCTAAAAGGCAGTTTAATTATCTACGACCCTAAAGGAGA
ACTCTACGAGAAAACAAGTTGGTTCCAAAATAATATTTGTGGAAGAGATATAGTTGTATTTGCACCTTTGGAACCTTCTA
TAAGTTGTAAATATAATTTACTAGATCAATGTGAAGATACAACAGAAATTCTACAATTAGCTAGCACTTTAATAGCGAAC
GGAGGTTTAAGCATAGAACTAGCAACAGGAAAGAAGACAGGAGGAGCAGAATGGGACAATATGGCTACACCGCTTTTTAG
CGCAGCGTTACTATATTGTAAAGAGCAGGGATTACCTGTAGCTACAGTAGAAACTGCATTTAGATTAATAATAGAAAAGG
ATCTAGAAGAATTAGATACTTTATTTTCTAATAGTACCGAGGACTGCAAAACACAATGGGATATATTTAATAGTGTTGGA
GATGCAGATAGAACCATAGGTAGTATAAAAATTACTTTGGCAACTGCATTAAAAATATTTGGAGATAAAAAAATATGCAA
GGCCTTAGGTGGTACCAGCACCTTCAACCCTGCACATTTAAGAAAAAAATCTACTTGTATATATATTATATCAGAAGAAA
GGAAAAGTAGCTATGTGAGCCCTGTAATGGCAAGCTTTTTTTCGCAATTGTTTGATAAAGTTTTATATAGTTACAATAAT
AACTCTCTACCTGTTTATTTTTTCCTAGATGAATTTGCTAATTTAGGAATGTTAAATAATATGAGTATAAACTGTGCTAC
AGTGCGAAGCAGAAAAGTTAGCTTGAATATATGCTTACAGAGTATTAGCCAATTGGAACAGATATATGGTAAGGATAATG
CCTTATCTATACTAAATAATCTTAAAACTAAAATAGTCTTTAGTGGATTATCCGATTTAAAAACTCTTAATTATTTTTCA
GAGTTATGTGGAAATACCCAAATACAAATATGCAGTACCAACATTGGGAAAGATAATACTACTAAAACTTATAGTAATAC
TACTAAAAAACTATTTAATAAAGAGGATATTAGATGCTTAAATGAAGATGATATGCTAATTGTAATGCATAATAAACAAC
CTATCTTAGATAAAAAGAATATCTATTATACACAAAAAAAATACAATTTTCAAATAAAAGAAACATCTCTAAAAATAAAT
TTACCAAAAGAAAACATTATTAGAAATAAAGATGAAGAAAAATATATAAATTTATTTAAAGAAAATATTAAACTTAAAAT
AGAGCAAAGAATAAAAGAACAGGAAGAAAAATTAATACTAGAAGGAATTAAAAAATTAGACCAACAGAGCACTAATAGGC
TGGTTGAGGAGCTATGGAAATAA

Upstream 100 bases:

>100_bases
TCGCTAGGGAGACCCTTAGAACCCCTATGTTCCGAGGAATGAATAAAGGTATTCACCATTATTCATTCCTACGGCTAATT
ATTAAAAAGGAGGAATGTAT

Downstream 100 bases:

>100_bases
CAGGCCGACTATATGCAATTTTTAGAGTGGGAGAAAAGAAGTATAAAACTATAGGATCTATAGCAGGATACCAACGCCAC
ATGGAAAGAGAACAATATAC

Product: TraG/TraD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MLSLLASTALIGGSTIAAELLGLKLKNKKNKIDNLANAKLSTKEDLENILGNYLQLSKNIKLKEKMGFEGSVTVAPTGGG
KTTSYFIPNLLNSNLKGSLIIYDPKGELYEKTSWFQNNICGRDIVVFAPLEPSISCKYNLLDQCEDTTEILQLASTLIAN
GGLSIELATGKKTGGAEWDNMATPLFSAALLYCKEQGLPVATVETAFRLIIEKDLEELDTLFSNSTEDCKTQWDIFNSVG
DADRTIGSIKITLATALKIFGDKKICKALGGTSTFNPAHLRKKSTCIYIISEERKSSYVSPVMASFFSQLFDKVLYSYNN
NSLPVYFFLDEFANLGMLNNMSINCATVRSRKVSLNICLQSISQLEQIYGKDNALSILNNLKTKIVFSGLSDLKTLNYFS
ELCGNTQIQICSTNIGKDNTTKTYSNTTKKLFNKEDIRCLNEDDMLIVMHNKQPILDKKNIYYTQKKYNFQIKETSLKIN
LPKENIIRNKDEEKYINLFKENIKLKIEQRIKEQEEKLILEGIKKLDQQSTNRLVEELWK

Sequences:

>Translated_540_residues
MLSLLASTALIGGSTIAAELLGLKLKNKKNKIDNLANAKLSTKEDLENILGNYLQLSKNIKLKEKMGFEGSVTVAPTGGG
KTTSYFIPNLLNSNLKGSLIIYDPKGELYEKTSWFQNNICGRDIVVFAPLEPSISCKYNLLDQCEDTTEILQLASTLIAN
GGLSIELATGKKTGGAEWDNMATPLFSAALLYCKEQGLPVATVETAFRLIIEKDLEELDTLFSNSTEDCKTQWDIFNSVG
DADRTIGSIKITLATALKIFGDKKICKALGGTSTFNPAHLRKKSTCIYIISEERKSSYVSPVMASFFSQLFDKVLYSYNN
NSLPVYFFLDEFANLGMLNNMSINCATVRSRKVSLNICLQSISQLEQIYGKDNALSILNNLKTKIVFSGLSDLKTLNYFS
ELCGNTQIQICSTNIGKDNTTKTYSNTTKKLFNKEDIRCLNEDDMLIVMHNKQPILDKKNIYYTQKKYNFQIKETSLKIN
LPKENIIRNKDEEKYINLFKENIKLKIEQRIKEQEEKLILEGIKKLDQQSTNRLVEELWK
>Mature_540_residues
MLSLLASTALIGGSTIAAELLGLKLKNKKNKIDNLANAKLSTKEDLENILGNYLQLSKNIKLKEKMGFEGSVTVAPTGGG
KTTSYFIPNLLNSNLKGSLIIYDPKGELYEKTSWFQNNICGRDIVVFAPLEPSISCKYNLLDQCEDTTEILQLASTLIAN
GGLSIELATGKKTGGAEWDNMATPLFSAALLYCKEQGLPVATVETAFRLIIEKDLEELDTLFSNSTEDCKTQWDIFNSVG
DADRTIGSIKITLATALKIFGDKKICKALGGTSTFNPAHLRKKSTCIYIISEERKSSYVSPVMASFFSQLFDKVLYSYNN
NSLPVYFFLDEFANLGMLNNMSINCATVRSRKVSLNICLQSISQLEQIYGKDNALSILNNLKTKIVFSGLSDLKTLNYFS
ELCGNTQIQICSTNIGKDNTTKTYSNTTKKLFNKEDIRCLNEDDMLIVMHNKQPILDKKNIYYTQKKYNFQIKETSLKIN
LPKENIIRNKDEEKYINLFKENIKLKIEQRIKEQEEKLILEGIKKLDQQSTNRLVEELWK

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 60722; Mature: 60722

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLLASTALIGGSTIAAELLGLKLKNKKNKIDNLANAKLSTKEDLENILGNYLQLSKNI
CCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
KLKEKMGFEGSVTVAPTGGGKTTSYFIPNLLNSNLKGSLIIYDPKGELYEKTSWFQNNIC
CCHHHCCCCCCEEEEECCCCCCCCEECHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCC
GRDIVVFAPLEPSISCKYNLLDQCEDTTEILQLASTLIANGGLSIELATGKKTGGAEWDN
CCCEEEEECCCCCCCEEECCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH
MATPLFSAALLYCKEQGLPVATVETAFRLIIEKDLEELDTLFSNSTEDCKTQWDIFNSVG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
DADRTIGSIKITLATALKIFGDKKICKALGGTSTFNPAHLRKKSTCIYIISEERKSSYVS
CHHHHHCEEEEHHHHHHHHHCCHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCCHHHHH
PVMASFFSQLFDKVLYSYNNNSLPVYFFLDEFANLGMLNNMSINCATVRSRKVSLNICLQ
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCEEEEEEECCCEEHHHHHHH
SISQLEQIYGKDNALSILNNLKTKIVFSGLSDLKTLNYFSELCGNTQIQICSTNIGKDNT
HHHHHHHHHCCCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
TKTYSNTTKKLFNKEDIRCLNEDDMLIVMHNKQPILDKKNIYYTQKKYNFQIKETSLKIN
CCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEE
LPKENIIRNKDEEKYINLFKENIKLKIEQRIKEQEEKLILEGIKKLDQQSTNRLVEELWK
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSLLASTALIGGSTIAAELLGLKLKNKKNKIDNLANAKLSTKEDLENILGNYLQLSKNI
CCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
KLKEKMGFEGSVTVAPTGGGKTTSYFIPNLLNSNLKGSLIIYDPKGELYEKTSWFQNNIC
CCHHHCCCCCCEEEEECCCCCCCCEECHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCC
GRDIVVFAPLEPSISCKYNLLDQCEDTTEILQLASTLIANGGLSIELATGKKTGGAEWDN
CCCEEEEECCCCCCCEEECCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH
MATPLFSAALLYCKEQGLPVATVETAFRLIIEKDLEELDTLFSNSTEDCKTQWDIFNSVG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
DADRTIGSIKITLATALKIFGDKKICKALGGTSTFNPAHLRKKSTCIYIISEERKSSYVS
CHHHHHCEEEEHHHHHHHHHCCHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCCHHHHH
PVMASFFSQLFDKVLYSYNNNSLPVYFFLDEFANLGMLNNMSINCATVRSRKVSLNICLQ
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCEEEEEEECCCEEHHHHHHH
SISQLEQIYGKDNALSILNNLKTKIVFSGLSDLKTLNYFSELCGNTQIQICSTNIGKDNT
HHHHHHHHHCCCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
TKTYSNTTKKLFNKEDIRCLNEDDMLIVMHNKQPILDKKNIYYTQKKYNFQIKETSLKIN
CCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEE
LPKENIIRNKDEEKYINLFKENIKLKIEQRIKEQEEKLILEGIKKLDQQSTNRLVEELWK
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2194232; 11743193; 11743194 [H]