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The map label for this gene is sigK [H]

Identifier: 153933487

GI number: 153933487

Start: 2551593

End: 2551883

Strand: Reverse

Name: sigK [H]

Synonym: CLB_2417

Alternate gene names: 153933487

Gene position: 2551883-2551593 (Counterclockwise)

Preceding gene: 153930942

Following gene: 153934143

Centisome position: 66.05

GC content: 27.84

Gene sequence:

>291_bases
GTGGGTAATGAAATTTCTCTTATGGATATATTAAGTAGTGATGAAGATTCTATAATAGAAATAGTTTCAACGAAAATAGA
AGTAAAAAAATTATATGGAAAAATAGATACTTGCCTTAGGGGAAGGGAAAAAAAGGTAATACAAATGAGGTATGGGTTAA
AGGATGGAAGACCCAGAACTCAAAGAGAAATAGCTGGCATACTAAACATATCTAGATCTTATGTTTCACGCATAGAAAAA
AAAGCCCTTAAAAAGCTTTATAAAGAATTAAATTATAATAAAAATATTTAA

Upstream 100 bases:

>100_bases
AAATAATAACAATAAAGAAAAATTTGATATAAAATTAAAAAGAGTATAAATGATATATATATAATAATGTAGGAACTTTT
TACATAACATACAACATGAA

Downstream 100 bases:

>100_bases
ATAAGAACTCTAAAGAATTAAGAATTTTATACATATAAGGTGATTCTTAATTCTTTTGTTTTATTTTTTATTTATTTTAT
GGCAGGAGATTCTTTACAGA

Product: DNA-dependent RNA polymerase sigma subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MGNEISLMDILSSDEDSIIEIVSTKIEVKKLYGKIDTCLRGREKKVIQMRYGLKDGRPRTQREIAGILNISRSYVSRIEK
KALKKLYKELNYNKNI

Sequences:

>Translated_96_residues
MGNEISLMDILSSDEDSIIEIVSTKIEVKKLYGKIDTCLRGREKKVIQMRYGLKDGRPRTQREIAGILNISRSYVSRIEK
KALKKLYKELNYNKNI
>Mature_95_residues
GNEISLMDILSSDEDSIIEIVSTKIEVKKLYGKIDTCLRGREKKVIQMRYGLKDGRPRTQREIAGILNISRSYVSRIEKK
ALKKLYKELNYNKNI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor directs the transcription of crystal protein genes, a sporulation-regulated event [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014209
- InterPro:   IPR016263
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 11149; Mature: 11018

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNEISLMDILSSDEDSIIEIVSTKIEVKKLYGKIDTCLRGREKKVIQMRYGLKDGRPRT
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
QREIAGILNISRSYVSRIEKKALKKLYKELNYNKNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GNEISLMDILSSDEDSIIEIVSTKIEVKKLYGKIDTCLRGREKKVIQMRYGLKDGRPRT
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
QREIAGILNISRSYVSRIEKKALKKLYKELNYNKNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]