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The map label for this gene is cspC [H]

Identifier: 152977400

GI number: 152977400

Start: 3784665

End: 3784862

Strand: Reverse

Name: cspC [H]

Synonym: Bcer98_3728

Alternate gene names: 152977400

Gene position: 3784862-3784665 (Counterclockwise)

Preceding gene: 152977401

Following gene: 152977399

Centisome position: 92.61

GC content: 37.88

Gene sequence:

>198_bases
ATGCAAGGAAGAGTAAAATGGTTCAATGCAGAAAAAGGATTTGGATTTATTGAACGCGAAGATGGCGATGATATTTTTGT
CCATTTTTCTGCAATTCAGCAAGAGGGGTATAAAACATTAGAAGAAGGACAAAATGTGGAATTTGATATTGTAGATGGAG
CACGTGGACCGCAAGCGGTGAATGTTGTGAAGTTGTAA

Upstream 100 bases:

>100_bases
AAAGGCGACAAGTCTTCTTTGACTTGACAGGTTGTCATTCGTTATAGTCAAACTATAGGACAAATGTCCTGATTTTTAGA
GTGAAGGGAATGGAACAAGC

Downstream 100 bases:

>100_bases
AGGATTTTAAGAACATAGAGCTGCGATTGTGGCAACGTTTATATAATTGGAAACCCTTGCTGTGACAAGGGTTTTTTATG
TTATATGGATTCTGTTAGAT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MQGRVKWFNAEKGFGFIEREDGDDIFVHFSAIQQEGYKTLEEGQNVEFDIVDGARGPQAVNVVKL

Sequences:

>Translated_65_residues
MQGRVKWFNAEKGFGFIEREDGDDIFVHFSAIQQEGYKTLEEGQNVEFDIVDGARGPQAVNVVKL
>Mature_65_residues
MQGRVKWFNAEKGFGFIEREDGDDIFVHFSAIQQEGYKTLEEGQNVEFDIVDGARGPQAVNVVKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=65.1515151515152, Blast_Score=92, Evalue=5e-21,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=65.1515151515152, Blast_Score=90, Evalue=4e-20,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=65.1515151515152, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=64.0625, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=63.6363636363636, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=62.1212121212121, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=52.3076923076923, Blast_Score=72, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7361; Mature: 7361

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGRVKWFNAEKGFGFIEREDGDDIFVHFSAIQQEGYKTLEEGQNVEFDIVDGARGPQAV
CCCCEEEEECCCCCCEEEECCCCEEEEEEEHHHCCCCHHHHCCCCEEEEEECCCCCCCEE
NVVKL
EEEEC
>Mature Secondary Structure
MQGRVKWFNAEKGFGFIEREDGDDIFVHFSAIQQEGYKTLEEGQNVEFDIVDGARGPQAV
CCCCEEEEECCCCCCEEEECCCCEEEEEEEHHHCCCCHHHHCCCCEEEEEECCCCCCCEE
NVVKL
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]