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The map label for this gene is 152976925

Identifier: 152976925

GI number: 152976925

Start: 3293995

End: 3294819

Strand: Reverse

Name: 152976925

Synonym: Bcer98_3227

Alternate gene names: NA

Gene position: 3294819-3293995 (Counterclockwise)

Preceding gene: 152976927

Following gene: 152976924

Centisome position: 80.62

GC content: 46.18

Gene sequence:

>825_bases
ATGTCTCAATGGTACAATCATTTTCATACAAATTGTGGTTGTAATAAAACAACATATATTCATTCGTGCTGTTTTAGCTG
CGATGGGACGGTTCCTAAAATTGGTCCAACCGGTCCAACGGGAATAACAGGAGCAACCGGTCCAACGGGAATAACAGGAG
CAACCGGTCCAACGGGAATAACAGGAGCAACCGGTCCAACGGGAATAACAGGAGCAACCGGTCCAACGGGAATAACAGGA
GCAACCGGTCCAACGGGAATAACAGGAGCAACCGGTCCAACGGGAATAACAGGAGCAACCGGTCCAATGGGAATAACAGG
AGCAACCGGTCCAACGGGAATAACAGGAGCAACCGGCCCGACCGGTTCAACGGGAGCAACAGGAGCAACTGGCCCAACTG
GTCCAACGGGTGTTAGTGTAACGGCAACGTACGCTTTTGCCAATAATACATCTGGTGGGGCTATATCTGTTCTTCTTGGC
GGAACGAATGTACCGCTTCCAAATAATCAAAATATTGGTCCAGGTATTACTGTTTCTGGTGGGAATACCGTATTTACTGT
TGCAAGTGCAGGGAACTACTATATTTCATATACAATTAATATAACAGCTTCGTTATTAGTAAGTTCTCGAATTACTGTTA
ATGGCTCACCGCTTGCGGGAACCATTAATTCCCCACTAGTGGCAACGACTTCATTTAGCGCGACAATTATTACAACGCTT
GCGGCTGGTGACGCGATTAGTTTGCAGCTATTTGGAATATTGGCTGTTGCAACTTTATCAACTACTACCCCTGGAGCCGT
TTTGACGATTATTAGATTGAGTTGA

Upstream 100 bases:

>100_bases
AGTGTTGCGTATCAAAGATTGGTTGTAGACCGAATCAGTTAATGTTTTATTCGGTTACGAAAGTGTATGTTAAAGATAAA
AAATGAAGGAAGGAATCACC

Downstream 100 bases:

>100_bases
TTTGAAATTAGAAATATTAGGTAATGAAGTTCCCTCTATTGTAATAAATGAATAGGGGAACAAGTACATAGAGGAAAAGT
ATTGAATAGTTGCATAAAAG

Product: triple helix repeat-containing collagen

Products: NA

Alternate protein names: Triple Helix Repeat-Containing Collagen; Collagen-Like Protein; BclA Protein; Collagen Triple Helix Repeat Domain-Containing Protein; Copper Amine Oxidase Domain Protein

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSQWYNHFHTNCGCNKTTYIHSCCFSCDGTVPKIGPTGPTGITGATGPTGITGATGPTGITGATGPTGITGATGPTGITG
ATGPTGITGATGPTGITGATGPMGITGATGPTGITGATGPTGSTGATGATGPTGPTGVSVTATYAFANNTSGGAISVLLG
GTNVPLPNNQNIGPGITVSGGNTVFTVASAGNYYISYTINITASLLVSSRITVNGSPLAGTINSPLVATTSFSATIITTL
AAGDAISLQLFGILAVATLSTTTPGAVLTIIRLS

Sequences:

>Translated_274_residues
MSQWYNHFHTNCGCNKTTYIHSCCFSCDGTVPKIGPTGPTGITGATGPTGITGATGPTGITGATGPTGITGATGPTGITG
ATGPTGITGATGPTGITGATGPMGITGATGPTGITGATGPTGSTGATGATGPTGPTGVSVTATYAFANNTSGGAISVLLG
GTNVPLPNNQNIGPGITVSGGNTVFTVASAGNYYISYTINITASLLVSSRITVNGSPLAGTINSPLVATTSFSATIITTL
AAGDAISLQLFGILAVATLSTTTPGAVLTIIRLS
>Mature_273_residues
SQWYNHFHTNCGCNKTTYIHSCCFSCDGTVPKIGPTGPTGITGATGPTGITGATGPTGITGATGPTGITGATGPTGITGA
TGPTGITGATGPTGITGATGPMGITGATGPTGITGATGPTGSTGATGATGPTGPTGVSVTATYAFANNTSGGAISVLLGG
TNVPLPNNQNIGPGITVSGGNTVFTVASAGNYYISYTINITASLLVSSRITVNGSPLAGTINSPLVATTSFSATIITTLA
AGDAISLQLFGILAVATLSTTTPGAVLTIIRLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI56847616, Length=276, Percent_Identity=30.4347826086957, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI65301115, Length=256, Percent_Identity=31.640625, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI111118976, Length=99, Percent_Identity=50.5050505050505, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI111118974, Length=99, Percent_Identity=50.5050505050505, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI98985806, Length=103, Percent_Identity=44.6601941747573, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI98985810, Length=103, Percent_Identity=44.6601941747573, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI299523257, Length=103, Percent_Identity=44.6601941747573, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI183583553, Length=103, Percent_Identity=38.8349514563107, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI299523253, Length=103, Percent_Identity=44.6601941747573, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI240255535, Length=110, Percent_Identity=40, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI55743106, Length=110, Percent_Identity=40, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI55743098, Length=110, Percent_Identity=40, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI110735435, Length=115, Percent_Identity=43.4782608695652, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI115392133, Length=103, Percent_Identity=44.6601941747573, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI4502951, Length=104, Percent_Identity=43.2692307692308, Blast_Score=65, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17551704, Length=105, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45549584, Length=142, Percent_Identity=33.8028169014084, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26116; Mature: 25984

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQWYNHFHTNCGCNKTTYIHSCCFSCDGTVPKIGPTGPTGITGATGPTGITGATGPTGI
CCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGATGPTGITGATGPTGITGATGPTGITGATGPTGITGATGPMGITGATGPTGITGATGP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGSTGATGATGPTGPTGVSVTATYAFANNTSGGAISVLLGGTNVPLPNNQNIGPGITVSG
CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC
GNTVFTVASAGNYYISYTINITASLLVSSRITVNGSPLAGTINSPLVATTSFSATIITTL
CCEEEEEEECCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEEE
AAGDAISLQLFGILAVATLSTTTPGAVLTIIRLS
ECCCEEEEHHHHEEHHHHHCCCCCCEEEEEEEEC
>Mature Secondary Structure 
SQWYNHFHTNCGCNKTTYIHSCCFSCDGTVPKIGPTGPTGITGATGPTGITGATGPTGI
CHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGATGPTGITGATGPTGITGATGPTGITGATGPTGITGATGPMGITGATGPTGITGATGP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGSTGATGATGPTGPTGVSVTATYAFANNTSGGAISVLLGGTNVPLPNNQNIGPGITVSG
CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC
GNTVFTVASAGNYYISYTINITASLLVSSRITVNGSPLAGTINSPLVATTSFSATIITTL
CCEEEEEEECCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEEE
AAGDAISLQLFGILAVATLSTTTPGAVLTIIRLS
ECCCEEEEHHHHEEHHHHHCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA