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The map label for this gene is yqgF [C]

Identifier: 152976801

GI number: 152976801

Start: 3140241

End: 3140654

Strand: Reverse

Name: yqgF [C]

Synonym: Bcer98_3099

Alternate gene names: 152976801

Gene position: 3140654-3140241 (Counterclockwise)

Preceding gene: 152976802

Following gene: 152976800

Centisome position: 76.84

GC content: 39.61

Gene sequence:

>414_bases
ATGCGAATATTAGGTTTAGATGTTGGTACAAAAACAGTTGGCGTTGCAATTAGCGACGAAATGGGCTGGACCGCGCAAGG
TTTAGAAACGATTAAAATTAACGAAGAACGAGAAATTTTCGGTTTTGATCGAGTTTCTGAACTAGTAAAACAGTATAATG
TGGACAAGATAGTAGTAGGGTTGCCAAAGAATATGAATGGAACAATCGGTCCGCGCGGTGAAGCTTGTCAAAGATATGCT
GAAAGTTTACGTGAACTTTTGCAACTAGAAGTTATACTTTGGGACGAACGCTTGTCAACAATGGCAGCGGAACGACTTCT
CATTTCGGCTGATGTAAGCCGAAAAAAACGAAAGCAAGTCGTTGATAAAATGGCTGCAGTCGTGATTTTACAAGGATATT
TAGATAGCAAATAA

Upstream 100 bases:

>100_bases
TCACAAAGACGCGCGTAATATTATTCGCAAACTAGAACGTGATGAGTTAATTGAAGAACTTGTGAAGTCTTATTTGAAGC
AACATCGTGAGGAGTAGTTT

Downstream 100 bases:

>100_bases
GAGGTGACCAGAATGGAAGAAAATCAAATTACAATTGTTGACGAAAAAGGAAATGAGCATTTATGTGAAATTATTTTCAC
GTTTGATGCTGAAAAATTTG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVGLPKNMNGTIGPRGEACQRYA
ESLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQVVDKMAAVVILQGYLDSK

Sequences:

>Translated_137_residues
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVGLPKNMNGTIGPRGEACQRYA
ESLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQVVDKMAAVVILQGYLDSK
>Mature_137_residues
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVGLPKNMNGTIGPRGEACQRYA
ESLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQVVDKMAAVVILQGYLDSK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=35.3383458646617, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15367; Mature: 15367

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVG
CEEEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE
LPKNMNGTIGPRGEACQRYAESLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VDKMAAVVILQGYLDSK
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVG
CEEEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE
LPKNMNGTIGPRGEACQRYAESLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VDKMAAVVILQGYLDSK
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA