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The map label for this gene is ybaF [H]

Identifier: 152973987

GI number: 152973987

Start: 143758

End: 144552

Strand: Direct

Name: ybaF [H]

Synonym: Bcer98_0135

Alternate gene names: 152973987

Gene position: 143758-144552 (Clockwise)

Preceding gene: 152973986

Following gene: 152973988

Centisome position: 3.52

GC content: 34.47

Gene sequence:

>795_bases
ATGCAGCAGTTGATTATTGGGAGATATATTCCAGGCAAGTCACTCATTCATCAACTTGATCCGCGTACGAAGCTATTAAT
TGTTTTTCTGTATGTATTTGTTGTCTTTTTAGCAAATAATGCGATTTCATATGGATTTTTATTCTTGTATGCACTCATTG
CTTTATTTTTTGCAAAAGTGCCGATTCGTTATGTACTTTCGGGCTTAAAACCAATTTTATGGATTTTTCTTTTCGCATTT
TTCTTGCATATTTTTACAAATAAAGAAGGAGATGTACTACTTCAGCTTGGTTGGTTTTCAATATATGAAAAAGGTTTAGA
GCAAGGGATATATATTTCAATACGCTTTGTTGTCATTATTTTAATGACAACTTTACTAACGTTAACGACTACACCTATTG
AGATTACAGATGGGATGGAAACATTATTAAAGCCATTGAAGCGTCTTAAAGTTCCTGTTCATGAAATTGCATTAATGATG
TCTATTTCTCTCCGATTTATTCCAACATTGATGGATGAGACGAGTAAAATTATGAAAGCACAAGCATCCCGTGGTATTGA
CTTTGCTGGTGGTCCGATAAAAGATCGGTTAAAAGCAATTATTTCTTTACTTGTTCCTCTTTTTATTAGTGCCTTTAAGC
GTGCTGAAGATTTAGCTATCGCAATGGAAGCTCGTGGGTATCAAAGTGGTGAGGGACGTACGAAATTTAGGCAACTACGC
TGGAAAACAAGTGATACTGTAACATTAATAAGCTTATTTTGCTTGGCGTGTATTCTAGTATGGGTAAGATCATAA

Upstream 100 bases:

>100_bases
TTGAAGAGAAGTTTGGTATTTCGATTCCAAAGGCTACCTTATCTTTAGAGGATCTTACTCATGAAGTTGTACAGGTATTA
CGAAAAGGTGGTCATGAATC

Downstream 100 bases:

>100_bases
TGGAGAGTAGAAAGATGGAAAGAATAAAGTGTACAGTTGCATATGATGGGATTAACTTTTGTGGATATCAAATCCAACCG
CAGCATCGTACTGTGCAACA

Product: cobalt transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQQLIIGRYIPGKSLIHQLDPRTKLLIVFLYVFVVFLANNAISYGFLFLYALIALFFAKVPIRYVLSGLKPILWIFLFAF
FLHIFTNKEGDVLLQLGWFSIYEKGLEQGIYISIRFVVIILMTTLLTLTTTPIEITDGMETLLKPLKRLKVPVHEIALMM
SISLRFIPTLMDETSKIMKAQASRGIDFAGGPIKDRLKAIISLLVPLFISAFKRAEDLAIAMEARGYQSGEGRTKFRQLR
WKTSDTVTLISLFCLACILVWVRS

Sequences:

>Translated_264_residues
MQQLIIGRYIPGKSLIHQLDPRTKLLIVFLYVFVVFLANNAISYGFLFLYALIALFFAKVPIRYVLSGLKPILWIFLFAF
FLHIFTNKEGDVLLQLGWFSIYEKGLEQGIYISIRFVVIILMTTLLTLTTTPIEITDGMETLLKPLKRLKVPVHEIALMM
SISLRFIPTLMDETSKIMKAQASRGIDFAGGPIKDRLKAIISLLVPLFISAFKRAEDLAIAMEARGYQSGEGRTKFRQLR
WKTSDTVTLISLFCLACILVWVRS
>Mature_264_residues
MQQLIIGRYIPGKSLIHQLDPRTKLLIVFLYVFVVFLANNAISYGFLFLYALIALFFAKVPIRYVLSGLKPILWIFLFAF
FLHIFTNKEGDVLLQLGWFSIYEKGLEQGIYISIRFVVIILMTTLLTLTTTPIEITDGMETLLKPLKRLKVPVHEIALMM
SISLRFIPTLMDETSKIMKAQASRGIDFAGGPIKDRLKAIISLLVPLFISAFKRAEDLAIAMEARGYQSGEGRTKFRQLR
WKTSDTVTLISLFCLACILVWVRS

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30090; Mature: 30090

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLIIGRYIPGKSLIHQLDPRTKLLIVFLYVFVVFLANNAISYGFLFLYALIALFFAKV
CCCCCEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
PIRYVLSGLKPILWIFLFAFFLHIFTNKEGDVLLQLGWFSIYEKGLEQGIYISIRFVVII
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHH
LMTTLLTLTTTPIEITDGMETLLKPLKRLKVPVHEIALMMSISLRFIPTLMDETSKIMKA
HHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QASRGIDFAGGPIKDRLKAIISLLVPLFISAFKRAEDLAIAMEARGYQSGEGRTKFRQLR
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
WKTSDTVTLISLFCLACILVWVRS
CCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQQLIIGRYIPGKSLIHQLDPRTKLLIVFLYVFVVFLANNAISYGFLFLYALIALFFAKV
CCCCCEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
PIRYVLSGLKPILWIFLFAFFLHIFTNKEGDVLLQLGWFSIYEKGLEQGIYISIRFVVII
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHH
LMTTLLTLTTTPIEITDGMETLLKPLKRLKVPVHEIALMMSISLRFIPTLMDETSKIMKA
HHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QASRGIDFAGGPIKDRLKAIISLLVPLFISAFKRAEDLAIAMEARGYQSGEGRTKFRQLR
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
WKTSDTVTLISLFCLACILVWVRS
CCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]