Click here to switch to the map view.

The map label for this gene is bssR [H]

Identifier: 152969425

GI number: 152969425

Start: 972852

End: 973271

Strand: Direct

Name: bssR [H]

Synonym: KPN_00868

Alternate gene names: 152969425

Gene position: 972852-973271 (Clockwise)

Preceding gene: 152969422

Following gene: 152969426

Centisome position: 18.3

GC content: 50.95

Gene sequence:

>420_bases
ATGGAAAGGGTAAAGGACGACAGAGGAGGAACCGTGATGACCGTTGACAGACTATACCGCCACCTTCTGCAGAAGCTTAT
TAACGCCAATATCGATATTGACGCCTATCTGCAACTGCGAAAGGCCAAAGGCTACATGTCAGTCAGCGAAAATGACCATC
TGCGTGATAACTTGTTTGAGCTTTGCCGTGAAATGCGTGCGCAGGCGCCGCGCCTGCAGAATGCCATTTCACCGGAGGAG
AGGGATGTCCTTCGCCTGGCCGGCGAATCGGTCGCCGCCGCTGCACTATGCCTGATGAGCGGGCATCATGATTGTCCGCT
ATACATCGCTGTTAACGTAGAGAAGCTAGAACGCTGTCTGACAGGATTGACCTCAAATATTCATAAATTGAATAAATTGG
CGCCAATCACTCATGCCTGA

Upstream 100 bases:

>100_bases
TACACCCTACAATGCGTTAAAGTTGCCACATTGTAAATGATGTTAAAGAACTGGGGATTATTGACCTGGCGCATCATTTT
GCACAAAAAATAACCGTATT

Downstream 100 bases:

>100_bases
TCGGCTGAAACCCAGGGGAAGTGAACGCTTCCCCTGTTAAAGGTTATGTAAAAATCCCCGCGCAAATTTCCCCGCTGGCT
ACCCTTTAGCCCAGAGCTGA

Product: biofilm formation regulatory protein BssR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MERVKDDRGGTVMTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEE
RDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITHA

Sequences:

>Translated_139_residues
MERVKDDRGGTVMTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEE
RDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITHA
>Mature_139_residues
MERVKDDRGGTVMTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMRAQAPRLQNAISPEE
RDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCLTGLTSNIHKLNKLAPITHA

Specific function: Represses biofilm formation in M9C glu and LB glu media but not in M9C and LB media. Seems to act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signaling pathways. C

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787059, Length=127, Percent_Identity=54.3307086614173, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020359
- ProDom:   PD079626 [H]

Pfam domain/function: PF10799 YliH [H]

EC number: NA

Molecular weight: Translated: 15706; Mature: 15706

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERVKDDRGGTVMTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFE
CCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
LCREMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCL
HHHHHHHCCHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHH
TGLTSNIHKLNKLAPITHA
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MERVKDDRGGTVMTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFE
CCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
LCREMRAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAVNVEKLERCL
HHHHHHHCCHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHH
TGLTSNIHKLNKLAPITHA
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]