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The map label for this gene is ygjR [C]

Identifier: 150398681

GI number: 150398681

Start: 3702162

End: 3703148

Strand: Direct

Name: ygjR [C]

Synonym: Smed_3495

Alternate gene names: 150398681

Gene position: 3702162-3703148 (Clockwise)

Preceding gene: 150398679

Following gene: 150398683

Centisome position: 97.89

GC content: 60.69

Gene sequence:

>987_bases
ATGCTGCGTTTCGGAATTTTGTCGACAGCCAAGATCGGCCGTGAACTCGTCGTACCCGCCATTCAGGACGCCGAGAACTG
TGTCGTCACCGCGATCGCAAGCCGCGATCTCGCCAAGGCACGGGCCATGGCCGACCGCTTCTCCGTGCCGCATGCTTTCG
GCTCCTATGAGGAGATGCTCGCCTCCGATACGATCGACGCCGTCTATATTCCGTTGCCGACGTCACAGCATGTCGAATGG
GCGATCAAGGCGGCGGATGCCGGAAAGCATGTGCTCTGCGAGAAACCGCTGGCGCTGAAAGCCGAAGAGATCGATGCCGT
GATCGCAGCGCGGGAGCGCAACAAGGTGCTGATCTCGGAAGCCTATATGGTGACCTACAGCCCCGTCTGGCGGAAGGTGC
GCGCGCTCCTCGCCGATGGCGCGATCGGCCGGCTCAGGCATGTCCAGGGCGCCTTCACTTATTATAACAGGGATCCGGGC
AACATGCGCAACGTCCCGGCGCTTGGCGGCGGCGGCCTGCCGGATATCGGTGTTTATCCGGCGATCTCGACCCGTTTCAC
GACCGGCAGGGAACCGTTGCGCGTGCAGGCCACCACCGAGCGCGATCCGGAGTTCGGCACCGACATTTATTCGAGCGTTC
GTGCTGATTTCGGCGATTTCGAACTCAGCTTCTACATATCCACGCAGCTCGCCGCCCGCCAGGTGATGGTCTTTCACGGC
GACAAGGGGTACATCGAAGTGAAGTCTCCCTTCAATGCTGATCGCTACGGCCGTGAGGAGGTGGAACTGACCAATCAGAA
CCACGGTCAATCGCAGCTTTTCCGGTTCCAGGATGCGCGCCAGTACAAGCTTGAGGCCGAAGCTTTCTCGCGCGCTGCGA
AAGGGGAGCCGGAAGAAGTGGTGACGCTGGAAAGTTCACGCCTCAACCAGAAATTCATAGACGCGATCTATCGGGCCAGC
GAAAGGGACGGCTGGGAGCCGGTCTGA

Upstream 100 bases:

>100_bases
TGCGGCTTGCTAGGTACGTACCTCGCGGATAGTGTCGGCACAGCTCGGGACCCAAGGGAATGCCGCGTCCTCGTGTCGCG
TAGGAAAAGGAGACTGCCAA

Downstream 100 bases:

>100_bases
GCCCACGCAAGATGAGCCCGGCGCACATGGCGCCGGGCCATTCTTTCATGCAGCCTGGAACAGCCGCGCCTGCGACGCTC
CCCGCATCTTGAAAAACAGG

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MLRFGILSTAKIGRELVVPAIQDAENCVVTAIASRDLAKARAMADRFSVPHAFGSYEEMLASDTIDAVYIPLPTSQHVEW
AIKAADAGKHVLCEKPLALKAEEIDAVIAARERNKVLISEAYMVTYSPVWRKVRALLADGAIGRLRHVQGAFTYYNRDPG
NMRNVPALGGGGLPDIGVYPAISTRFTTGREPLRVQATTERDPEFGTDIYSSVRADFGDFELSFYISTQLAARQVMVFHG
DKGYIEVKSPFNADRYGREEVELTNQNHGQSQLFRFQDARQYKLEAEAFSRAAKGEPEEVVTLESSRLNQKFIDAIYRAS
ERDGWEPV

Sequences:

>Translated_328_residues
MLRFGILSTAKIGRELVVPAIQDAENCVVTAIASRDLAKARAMADRFSVPHAFGSYEEMLASDTIDAVYIPLPTSQHVEW
AIKAADAGKHVLCEKPLALKAEEIDAVIAARERNKVLISEAYMVTYSPVWRKVRALLADGAIGRLRHVQGAFTYYNRDPG
NMRNVPALGGGGLPDIGVYPAISTRFTTGREPLRVQATTERDPEFGTDIYSSVRADFGDFELSFYISTQLAARQVMVFHG
DKGYIEVKSPFNADRYGREEVELTNQNHGQSQLFRFQDARQYKLEAEAFSRAAKGEPEEVVTLESSRLNQKFIDAIYRAS
ERDGWEPV
>Mature_328_residues
MLRFGILSTAKIGRELVVPAIQDAENCVVTAIASRDLAKARAMADRFSVPHAFGSYEEMLASDTIDAVYIPLPTSQHVEW
AIKAADAGKHVLCEKPLALKAEEIDAVIAARERNKVLISEAYMVTYSPVWRKVRALLADGAIGRLRHVQGAFTYYNRDPG
NMRNVPALGGGGLPDIGVYPAISTRFTTGREPLRVQATTERDPEFGTDIYSSVRADFGDFELSFYISTQLAARQVMVFHG
DKGYIEVKSPFNADRYGREEVELTNQNHGQSQLFRFQDARQYKLEAEAFSRAAKGEPEEVVTLESSRLNQKFIDAIYRAS
ERDGWEPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=261, Percent_Identity=30.2681992337165, Blast_Score=109, Evalue=4e-24,
Organism=Escherichia coli, GI145693182, Length=335, Percent_Identity=29.8507462686567, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787574, Length=344, Percent_Identity=21.8023255813953, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581117, Length=246, Percent_Identity=28.8617886178862, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24581115, Length=223, Percent_Identity=23.3183856502242, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36558; Mature: 36558

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFGILSTAKIGRELVVPAIQDAENCVVTAIASRDLAKARAMADRFSVPHAFGSYEEML
CEEECCCCHHHHCHHEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHH
ASDTIDAVYIPLPTSQHVEWAIKAADAGKHVLCEKPLALKAEEIDAVIAARERNKVLISE
HHCCCCEEEEECCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHEECCCCEEEEEE
AYMVTYSPVWRKVRALLADGAIGRLRHVQGAFTYYNRDPGNMRNVPALGGGGLPDIGVYP
EEEEEEHHHHHHHHHHHHCCCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
AISTRFTTGREPLRVQATTERDPEFGTDIYSSVRADFGDFELSFYISTQLAARQVMVFHG
CCCCEECCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEECHHHHEEEEEEEC
DKGYIEVKSPFNADRYGREEVELTNQNHGQSQLFRFQDARQYKLEAEAFSRAAKGEPEEV
CCCEEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHCHHHHEEHHHHHHHHHCCCCCCE
VTLESSRLNQKFIDAIYRASERDGWEPV
EEECHHHCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLRFGILSTAKIGRELVVPAIQDAENCVVTAIASRDLAKARAMADRFSVPHAFGSYEEML
CEEECCCCHHHHCHHEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHH
ASDTIDAVYIPLPTSQHVEWAIKAADAGKHVLCEKPLALKAEEIDAVIAARERNKVLISE
HHCCCCEEEEECCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHEECCCCEEEEEE
AYMVTYSPVWRKVRALLADGAIGRLRHVQGAFTYYNRDPGNMRNVPALGGGGLPDIGVYP
EEEEEEHHHHHHHHHHHHCCCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
AISTRFTTGREPLRVQATTERDPEFGTDIYSSVRADFGDFELSFYISTQLAARQVMVFHG
CCCCEECCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEECHHHHEEEEEEEC
DKGYIEVKSPFNADRYGREEVELTNQNHGQSQLFRFQDARQYKLEAEAFSRAAKGEPEEV
CCCEEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHCHHHHEEHHHHHHHHHCCCCCCE
VTLESSRLNQKFIDAIYRASERDGWEPV
EEECHHHCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]