BacMap

Definition	Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession	NC_009636
Length	3,781,904

Click here to switch to the map view.

The map label for this gene is gdhII [H]

Identifier: 150398678

GI number: 150398678

Start: 3699548

End: 3700318

Strand: Direct

Name: gdhII [H]

Synonym: Smed_3492

Alternate gene names: 150398678

Gene position: 3699548-3700318 (Clockwise)

Preceding gene: 150398676

Following gene: 150398679

Centisome position: 97.82

GC content: 65.89

Gene sequence:

>771_bases
ATGCCGAGACTTGAAGGAAAGACCGCAATCATTACCGGGGCAAGCTCCGGTATCGGCCGCGCCGCCGCGCTGCTCTTTGC
ACGCGAGGGGGCAAAGGTCGTCGTAACGGCGCGAAATGAGAATGCGCTTGCGGCGCTCGCCGAGGAGATCGCGGCGATCG
GCGGCGAAGCGGCGATTCTTGCCGGCGACGTGCGGGACGAATCCCTGCATGAGGCGCTGACCAAGCTGGCGGTGCGGCGC
TTCGGCGGTCTCGATGCCGCCTTCAACAATGCCGGCGTCCTCGGTGCGATGGGAGAGATATCTTCGATCTCGGCCGAGGG
TTGGCGCGAGACGCTCGACACCAATCTCACGAGCGCCTTTCTGGCAGCAAAATACCAGGTCCCGGCAATTGCCGCCGGCG
GCGGCGGCTCGATCACCTTCACCTCCAGTTTTGTCGGCCACACAGCAGGCTTTGCGGGGGTTGCCGCCTATGCGGCAAGC
AAAGCCGGGCTGATCGGCCTGGTACAGTCGCTGGCGGTCGAACTCGGCGCGCGCGGCATTCGCGTAAACGCGCTGCTTCC
CGGCGGCACAGACACCCCCGCTAATTTCGCGAATCTGCCAGGAGCGGCGCCGGAGACGCGCGGTTTCGTGGAAGGGCTGC
ACGCATTGAAGCGCATCGCGCGGCCGGAGGAAATCGCCGAAGCCGCCCTTTACCTCGCCTCCGACGGTGCTAGCTTTGTG
ACCGGCTCCGCGCTTCTGGCCGATGGCGGAGCCTCGGTGACGAGGGTGTGA

Upstream 100 bases:

>100_bases
CAGCGGGTCGGGTGATCTCATCCGAACGGAAATCGGGTGGTTGCGGTCAGGCTCATCGGGCAATGCTCCCGTCGTCAACA
AAATGAGACGGAGAAGAACG

Downstream 100 bases:

>100_bases
GAGCAACCCAGAGGCGTCGAAGGCGATGAGCGCATGAAAAAACCCGGATCCATGAAATCCCTCGAAGATCTCGGGCGCGT
GCGCCTTTCGAAAAACTTCT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MPRLEGKTAIITGASSGIGRAAALLFAREGAKVVVTARNENALAALAEEIAAIGGEAAILAGDVRDESLHEALTKLAVRR
FGGLDAAFNNAGVLGAMGEISSISAEGWRETLDTNLTSAFLAAKYQVPAIAAGGGGSITFTSSFVGHTAGFAGVAAYAAS
KAGLIGLVQSLAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFV
TGSALLADGGASVTRV

Sequences:

>Translated_256_residues
MPRLEGKTAIITGASSGIGRAAALLFAREGAKVVVTARNENALAALAEEIAAIGGEAAILAGDVRDESLHEALTKLAVRR
FGGLDAAFNNAGVLGAMGEISSISAEGWRETLDTNLTSAFLAAKYQVPAIAAGGGGSITFTSSFVGHTAGFAGVAAYAAS
KAGLIGLVQSLAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFV
TGSALLADGGASVTRV
>Mature_255_residues
PRLEGKTAIITGASSGIGRAAALLFAREGAKVVVTARNENALAALAEEIAAIGGEAAILAGDVRDESLHEALTKLAVRRF
GGLDAAFNNAGVLGAMGEISSISAEGWRETLDTNLTSAFLAAKYQVPAIAAGGGGSITFTSSFVGHTAGFAGVAAYAASK
AGLIGLVQSLAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVT
GSALLADGGASVTRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=33.4661354581673, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=35.408560311284, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=31.6793893129771, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=34.9462365591398, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=31.9672131147541, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=29.6875, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=30.5019305019305, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=32.03125, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=31.6, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=33.160621761658, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI4503817, Length=252, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI4504505, Length=244, Percent_Identity=32.3770491803279, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI4503301, Length=253, Percent_Identity=28.8537549407115, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=30.6878306878307, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI31542939, Length=250, Percent_Identity=30.4, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI302344755, Length=110, Percent_Identity=38.1818181818182, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI32455239, Length=192, Percent_Identity=32.2916666666667, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031765, Length=192, Percent_Identity=32.2916666666667, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7657478, Length=223, Percent_Identity=31.390134529148, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=29.7619047619048, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=29.6, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI142976729, Length=191, Percent_Identity=26.7015706806283, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI224922801, Length=186, Percent_Identity=32.258064516129, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=35.7976653696498, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=37.6518218623482, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=34.6774193548387, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=35.3658536585366, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=31.8725099601594, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=36.8, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=34.375, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=31.5789473684211, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=32.5301204819277, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=30.3149606299213, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=30.6772908366534, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=27.2373540856031, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787820, Length=233, Percent_Identity=27.4678111587983, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=28.515625, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=32.5581395348837, Blast_Score=127, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=35.7429718875502, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=35.6862745098039, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=34.3873517786561, Blast_Score=117, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=34.4569288389513, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=35.4838709677419, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=32.7137546468402, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=34.6863468634686, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=32.7067669172932, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=34.3283582089552, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17544670, Length=274, Percent_Identity=28.8321167883212, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=32.2097378277154, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=33.210332103321, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=273, Percent_Identity=33.6996336996337, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.188679245283, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=34.9206349206349, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=34.3283582089552, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=29.4339622641509, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=32.4626865671642, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=32.5757575757576, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=271, Percent_Identity=30.6273062730627, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=30.7407407407407, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=255, Percent_Identity=33.7254901960784, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=33.160621761658, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=31.0861423220974, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=28.8, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=29.1044776119403, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=243, Percent_Identity=29.2181069958848, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=194, Percent_Identity=32.9896907216495, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=28.6821705426357, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=26.953125, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=30.9803921568627, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=198, Percent_Identity=30.8080808080808, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=29.3193717277487, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17558628, Length=190, Percent_Identity=32.6315789473684, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=29.7619047619048, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=28.968253968254, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322861, Length=252, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322226, Length=189, Percent_Identity=30.6878306878307, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=194, Percent_Identity=30.9278350515464, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=26.8, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=36, Blast_Score=128, Evalue=3e-30,
Organism=Drosophila melanogaster, GI21357041, Length=261, Percent_Identity=34.0996168582375, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=36.4705882352941, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=34.7826086956522, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=30.5555555555556, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34.8, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=35.9683794466403, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=32.5396825396825, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=32.9896907216495, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21357673, Length=193, Percent_Identity=33.160621761658, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI21358495, Length=206, Percent_Identity=29.6116504854369, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641232, Length=244, Percent_Identity=29.9180327868852, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI281364494, Length=243, Percent_Identity=27.5720164609054, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21356301, Length=248, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17737361, Length=239, Percent_Identity=28.0334728033473, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 25558; Mature: 25427

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLEGKTAIITGASSGIGRAAALLFAREGAKVVVTARNENALAALAEEIAAIGGEAAIL
CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEE
AGDVRDESLHEALTKLAVRRFGGLDAAFNNAGVLGAMGEISSISAEGWRETLDTNLTSAF
ECCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHHH
LAAKYQVPAIAAGGGGSITFTSSFVGHTAGFAGVAAYAASKAGLIGLVQSLAVELGARGI
HHHHCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
RVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFV
EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHH
TGSALLADGGASVTRV
CCCCEEECCCCCCCCC
>Mature Secondary Structure 
PRLEGKTAIITGASSGIGRAAALLFAREGAKVVVTARNENALAALAEEIAAIGGEAAIL
CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEE
AGDVRDESLHEALTKLAVRRFGGLDAAFNNAGVLGAMGEISSISAEGWRETLDTNLTSAF
ECCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHHH
LAAKYQVPAIAAGGGGSITFTSSFVGHTAGFAGVAAYAASKAGLIGLVQSLAVELGARGI
HHHHCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
RVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFV
EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHH
TGSALLADGGASVTRV
CCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA