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The map label for this gene is ycaN [H]

Identifier: 150398676

GI number: 150398676

Start: 3697899

End: 3698789

Strand: Direct

Name: ycaN [H]

Synonym: Smed_3490

Alternate gene names: 150398676

Gene position: 3697899-3698789 (Clockwise)

Preceding gene: 150398673

Following gene: 150398678

Centisome position: 97.78

GC content: 64.76

Gene sequence:

>891_bases
ATGAACCGCACTCAGCTTTCCCAACTGGCCGTCCTTTCCGCCGTCGCCGCGCATGGCAGTTTCCGCGGAGCGGCAAAAGA
ACTCGGCATCGCGCCGTCGGCCGTCAGTCATGCCGTAAGCAGTCTCGAAGCAAGCCTCGGCGTACGCCTGCTTGCCCGCA
CGACGCGCAGCGTTGCAGCGACGGAGGAGGGAGGACGCCTTCTGGAGCGGCTACAACCGGCGCTCGACGAGATTGCCCAC
GCGCTTTTGCGAGCGGCCGAGGCCCGTGATCGGCCGGCCGGAAACCTGCGCATCACTGCGCCGCGCTTTGCCGCCGACCT
CATTCTCGCGCCGCGCCTCGGTGATTTTCTCGGCACCTATCCGGACATCGTCCTCGAAATCGCCAATGAGGACGGCTTCA
CCAATATTGTCGAAGAGGGCTATGACGCCGGAATCAGGCTCGGAGAAAGCCTGGAGGCGGACATGATCGCGGTGAAGGTC
GGCCCGGAGCTGAAAAGTGCGGTCGTCGCGGCGCCCTCCTATTTCGAGCGCTTCCCGACGCCCCGCCACCCGCGCGATCT
GGCGGCCCATCGCTGCATCCGCCGGCGCTTCTCCAACGGCACCATTTATCGCTGGGAATTCGAGAAGGGCGGGGAGGAAC
TGACCGTTTCGGTGAGCGGTCCGCTGATTCTGGGCGAAGACCGGCCGATCATAACGGCTGCGCTCGGCGGTGCGGGGCTC
GCCTATCTGTTCGAACCGCGCGTCAGCGCTCTTCTGGTGGAAGGCAGGCTTATCCGGGTGCTCGAAGACTGGTGCGCGCC
CTATGCCGGTCCTTTCCTTTACTATCCAACGCGCCGTCTGATGCGCCCGGCGCTTCGGGCGTTCATCGATTTCTTCCGGC
AAAGCGGCTAG

Upstream 100 bases:

>100_bases
CGTCGCCCGATGAGGGCGCTGCGACAAATGGAAGATAGGGGCATCACAGCCGGTTGAAAATCTCTGTCAATTCTCACGGG
TTGTTCTATGATTTCGATCA

Downstream 100 bases:

>100_bases
TCAGGAAAGCGGCAGCCGGCGCTTTCGCCGGCTGCCCGCGAATATCACGCGGCCTTTTTGTTCGCCTGCGCCGTCGCGAT
TTTCGTCAGGTCCTCGTCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNRTQLSQLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVSSLEASLGVRLLARTTRSVAATEEGGRLLERLQPALDEIAH
ALLRAAEARDRPAGNLRITAPRFAADLILAPRLGDFLGTYPDIVLEIANEDGFTNIVEEGYDAGIRLGESLEADMIAVKV
GPELKSAVVAAPSYFERFPTPRHPRDLAAHRCIRRRFSNGTIYRWEFEKGGEELTVSVSGPLILGEDRPIITAALGGAGL
AYLFEPRVSALLVEGRLIRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDFFRQSG

Sequences:

>Translated_296_residues
MNRTQLSQLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVSSLEASLGVRLLARTTRSVAATEEGGRLLERLQPALDEIAH
ALLRAAEARDRPAGNLRITAPRFAADLILAPRLGDFLGTYPDIVLEIANEDGFTNIVEEGYDAGIRLGESLEADMIAVKV
GPELKSAVVAAPSYFERFPTPRHPRDLAAHRCIRRRFSNGTIYRWEFEKGGEELTVSVSGPLILGEDRPIITAALGGAGL
AYLFEPRVSALLVEGRLIRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDFFRQSG
>Mature_296_residues
MNRTQLSQLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVSSLEASLGVRLLARTTRSVAATEEGGRLLERLQPALDEIAH
ALLRAAEARDRPAGNLRITAPRFAADLILAPRLGDFLGTYPDIVLEIANEDGFTNIVEEGYDAGIRLGESLEADMIAVKV
GPELKSAVVAAPSYFERFPTPRHPRDLAAHRCIRRRFSNGTIYRWEFEKGGEELTVSVSGPLILGEDRPIITAALGGAGL
AYLFEPRVSALLVEGRLIRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDFFRQSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=43.6426116838488, Blast_Score=247, Evalue=7e-67,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=39.7306397306397, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=32.5342465753425, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=30.1038062283737, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=28.6713286713287, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=30.8970099667774, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1786448, Length=288, Percent_Identity=29.8611111111111, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=27.3927392739274, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789639, Length=186, Percent_Identity=29.5698924731183, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=28.6259541984733, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32219; Mature: 32219

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTQLSQLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVSSLEASLGVRLLARTTRSVAA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEEGGRLLERLQPALDEIAHALLRAAEARDRPAGNLRITAPRFAADLILAPRLGDFLGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCHHHHHHCCC
PDIVLEIANEDGFTNIVEEGYDAGIRLGESLEADMIAVKVGPELKSAVVAAPSYFERFPT
HHHEEEECCCCCHHHHHHCCHHHCCCCCCCCCCCEEEEEECCHHHHHHHCCCHHHHHCCC
PRHPRDLAAHRCIRRRFSNGTIYRWEFEKGGEELTVSVSGPLILGEDRPIITAALGGAGL
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCEEECCCCCEEEEECCCCCE
AYLFEPRVSALLVEGRLIRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDFFRQSG
EEHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRTQLSQLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVSSLEASLGVRLLARTTRSVAA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEEGGRLLERLQPALDEIAHALLRAAEARDRPAGNLRITAPRFAADLILAPRLGDFLGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCHHHHHHCCC
PDIVLEIANEDGFTNIVEEGYDAGIRLGESLEADMIAVKVGPELKSAVVAAPSYFERFPT
HHHEEEECCCCCHHHHHHCCHHHCCCCCCCCCCCEEEEEECCHHHHHHHCCCHHHHHCCC
PRHPRDLAAHRCIRRRFSNGTIYRWEFEKGGEELTVSVSGPLILGEDRPIITAALGGAGL
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCEEECCCCCEEEEECCCCCE
AYLFEPRVSALLVEGRLIRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDFFRQSG
EEHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]