Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
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Accession | NC_009636 |
Length | 3,781,904 |
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The map label for this gene is fur [H]
Identifier: 150398637
GI number: 150398637
Start: 3660338
End: 3660760
Strand: Direct
Name: fur [H]
Synonym: Smed_3451
Alternate gene names: 150398637
Gene position: 3660338-3660760 (Clockwise)
Preceding gene: 150398633
Following gene: 150398640
Centisome position: 96.79
GC content: 59.34
Gene sequence:
>423_bases ATGACGAAAGCAACGCACATGTCCTCACAGGAGAGACTGCGCAATTCGGGTTTGCGCCCGACGCGCCAGCGCGTCGCGCT TGCCGACCTGATTTTCGCCAAGGGCGACCGTCACCTGACGGTGGAGGAACTCCATGAGGAGGCCGTCACGGCCGGCGTTC CCGTTTCGCTCGCGACCGTCTACAACACGCTCCATCAGTTTACCGAGGCCGGTATGATCCGCGTTCTGGCCGTCGAGAGC GCAAGGACCTATTTCGACACGAATGTTTCGGATCACCACCATTTCTTCATCGAGGGCGAGAACGAGGTCCTCGACATCCC TGTGAGCAATATTCAGATCGACAATCTCCCGGAACCGCCGGAAGGGATGGAAATCTCCCATGTCGACGTGGTGATCCGGC TGCGCCATAAGGTCGAGCGCTGA
Upstream 100 bases:
>100_bases CCTTCGCATGTGCGGAATCTATTGAAAGCCGCGGCGCCAGAAGTTATATCGCAAACTGATAAATCACGGACCCCGCAGTT ATATATCGGAACGGCTGTCG
Downstream 100 bases:
>100_bases GCCTTCGATCCTCTTTCTCCGTCAAACCAATCTCATCACATCACGTCGTCCGGATCGCGGCCGGGACCGGCTTTCCCGGT CGGCAGCATCCACCCGTATC
Product: ferric uptake regulator family protein
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MTKATHMSSQERLRNSGLRPTRQRVALADLIFAKGDRHLTVEELHEEAVTAGVPVSLATVYNTLHQFTEAGMIRVLAVES ARTYFDTNVSDHHHFFIEGENEVLDIPVSNIQIDNLPEPPEGMEISHVDVVIRLRHKVER
Sequences:
>Translated_140_residues MTKATHMSSQERLRNSGLRPTRQRVALADLIFAKGDRHLTVEELHEEAVTAGVPVSLATVYNTLHQFTEAGMIRVLAVES ARTYFDTNVSDHHHFFIEGENEVLDIPVSNIQIDNLPEPPEGMEISHVDVVIRLRHKVER >Mature_139_residues TKATHMSSQERLRNSGLRPTRQRVALADLIFAKGDRHLTVEELHEEAVTAGVPVSLATVYNTLHQFTEAGMIRVLAVESA RTYFDTNVSDHHHFFIEGENEVLDIPVSNIQIDNLPEPPEGMEISHVDVVIRLRHKVER
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
None
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 - InterPro: IPR011991 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 15846; Mature: 15715
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKATHMSSQERLRNSGLRPTRQRVALADLIFAKGDRHLTVEELHEEAVTAGVPVSLATV CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCHHHHHH YNTLHQFTEAGMIRVLAVESARTYFDTNVSDHHHFFIEGENEVLDIPVSNIQIDNLPEPP HHHHHHHHHCCEEEEEEECCCHHEECCCCCCCEEEEEECCCCEEECCCCCEEECCCCCCC EGMEISHVDVVIRLRHKVER CCCEEHHHHHHHHHHHHHCC >Mature Secondary Structure TKATHMSSQERLRNSGLRPTRQRVALADLIFAKGDRHLTVEELHEEAVTAGVPVSLATV CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCHHHHHH YNTLHQFTEAGMIRVLAVESARTYFDTNVSDHHHFFIEGENEVLDIPVSNIQIDNLPEPP HHHHHHHHHCCEEEEEEECCCHHEECCCCCCCEEEEEECCCCEEECCCCCEEECCCCCCC EGMEISHVDVVIRLRHKVER CCCEEHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]