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The map label for this gene is 150398425

Identifier: 150398425

GI number: 150398425

Start: 3408216

End: 3409490

Strand: Direct

Name: 150398425

Synonym: Smed_3233

Alternate gene names: NA

Gene position: 3408216-3409490 (Clockwise)

Preceding gene: 150398422

Following gene: 150398426

Centisome position: 90.12

GC content: 61.8

Gene sequence:

>1275_bases
ATGTTCTACCAGTTTTACGAGTTGAACCATGCAATGATGGCTCCGTGGCGCACTGCGGCTGACGCCATGCGGCTGGCCTT
CAGCAATCCGATGAATCCGGTCTCGCATACGTATTTTGGCCGAGCCGCCGCCGCAGGGCTGGAGGTGTTCGAGCGCGCCA
CCCGCCGCTACGGAAAGCCGGAATTCGGATTACCGGAAACCGAGATCGACGGCCAGCCCGTGGCGGTGCGCGAAAGAATC
GTCTGGCGTCAGCCGTTCTGCAACCTCATACACTTCGAACGCAGGCTCCCCAAGGACCGCGCTCCCGATCCCAAAGTGCT
TATCGTCGCGCCGATGTCCGGCCATTATGCCACGCTCCTGCGCGGAACCGTGGCGGCAATGCTGCCCCATTCCGACGTCT
ATATCACCGATTGGATCGATGCCCGAATGGTCCCGTTGAGCGAGGGAACCTTCGATCTCGACGACTATATCGACTACGTC
ATTCAGATGCTGCACTTTCTGGGACCGGATGCGCATGTGATCGGCGTGTGCCAGCCGGCCGTTCCGGTCCTGGCGGCCGT
CGCGCTGATGGAGGCGGAGGATGATCCGCTAACGCCCTCGACGATGACACTGATGGGCGGTCCGATCGACACGCGCATCA
ACCCGACGGCGGTCAACCAGCTGGCGAAGGAGCGGCCGCTCGACTGGTTCCGCGACAATGTCCTCATGCCGGTGCCATGG
CCTCAGCCCGGTTTCATGCGGCTGGTCTATCCGGGTTTCCTCCAGCTCTCCGGTTTCATGTCGATGAACCTCGACCGGCA
CTTGATGGCCCACAAGGAGTTCTTCGCTCATCTGGTGAAGAACGACGGGGATGCCGCCGACAAGCACCGCGAATTCTACG
ACGAGTATCTCGCGGTGATGGACCTCACCGCGGAGTTCTACCTGCAGACGGTGCAAGTCGTCTTCATGCAGCACGCGCTG
CCTAAGGGCGAGATGATGCACCGGGGCAAGCGCGTCGATCCTGCGTCGATCCGCCGGGTGGCGCTGTTGACCGTCGAGGG
TGAGAACGACGACATCTCCGGCCTCGGCCAGACCGAGGCAGCGCAGACGATCTGTAACAGCATTCCGGATCATATGCGGC
AGCACTACATGCAGCCCGACGTCGGACATTATGGCGTGTTCAATGGATCGCGCTTCCGTCGCGAGATCGCACCGCGCATC
GTGGCGTTCCAGCGGCAGCATTCGCGCCATGCGAAGCCGGTCAAACAGCTCATCAAGGGCGGCAAGTCGGCCTGA

Upstream 100 bases:

>100_bases
GGTGCTAGTCTGGCAGCGATTGCGGAAATCACGATGGACAACCGCAAGCGTCGGACTGGGAGCGGCGTTGTCTTTGATCT
GAAACAAGGGGTACGCGCCC

Downstream 100 bases:

>100_bases
GGCGCCGGCGAAGACCTTTGATCTGCCGGGCAGACTATCTTTTCAAGGTGTTGTGCATTCGTTTTGACGCAGCAAAGTCA
GGGGGTTGTCCGATTCCTCG

Product: polyhydroxyalkanoate depolymerase

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; Poly(3-Hydroxybutyrate) Depolymerase; Poly(3-Hydroxyalkanoate)Synthetase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; PHB De-Polymerase Domain Protein; PHB De-Polymerase; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MFYQFYELNHAMMAPWRTAADAMRLAFSNPMNPVSHTYFGRAAAAGLEVFERATRRYGKPEFGLPETEIDGQPVAVRERI
VWRQPFCNLIHFERRLPKDRAPDPKVLIVAPMSGHYATLLRGTVAAMLPHSDVYITDWIDARMVPLSEGTFDLDDYIDYV
IQMLHFLGPDAHVIGVCQPAVPVLAAVALMEAEDDPLTPSTMTLMGGPIDTRINPTAVNQLAKERPLDWFRDNVLMPVPW
PQPGFMRLVYPGFLQLSGFMSMNLDRHLMAHKEFFAHLVKNDGDAADKHREFYDEYLAVMDLTAEFYLQTVQVVFMQHAL
PKGEMMHRGKRVDPASIRRVALLTVEGENDDISGLGQTEAAQTICNSIPDHMRQHYMQPDVGHYGVFNGSRFRREIAPRI
VAFQRQHSRHAKPVKQLIKGGKSA

Sequences:

>Translated_424_residues
MFYQFYELNHAMMAPWRTAADAMRLAFSNPMNPVSHTYFGRAAAAGLEVFERATRRYGKPEFGLPETEIDGQPVAVRERI
VWRQPFCNLIHFERRLPKDRAPDPKVLIVAPMSGHYATLLRGTVAAMLPHSDVYITDWIDARMVPLSEGTFDLDDYIDYV
IQMLHFLGPDAHVIGVCQPAVPVLAAVALMEAEDDPLTPSTMTLMGGPIDTRINPTAVNQLAKERPLDWFRDNVLMPVPW
PQPGFMRLVYPGFLQLSGFMSMNLDRHLMAHKEFFAHLVKNDGDAADKHREFYDEYLAVMDLTAEFYLQTVQVVFMQHAL
PKGEMMHRGKRVDPASIRRVALLTVEGENDDISGLGQTEAAQTICNSIPDHMRQHYMQPDVGHYGVFNGSRFRREIAPRI
VAFQRQHSRHAKPVKQLIKGGKSA
>Mature_424_residues
MFYQFYELNHAMMAPWRTAADAMRLAFSNPMNPVSHTYFGRAAAAGLEVFERATRRYGKPEFGLPETEIDGQPVAVRERI
VWRQPFCNLIHFERRLPKDRAPDPKVLIVAPMSGHYATLLRGTVAAMLPHSDVYITDWIDARMVPLSEGTFDLDDYIDYV
IQMLHFLGPDAHVIGVCQPAVPVLAAVALMEAEDDPLTPSTMTLMGGPIDTRINPTAVNQLAKERPLDWFRDNVLMPVPW
PQPGFMRLVYPGFLQLSGFMSMNLDRHLMAHKEFFAHLVKNDGDAADKHREFYDEYLAVMDLTAEFYLQTVQVVFMQHAL
PKGEMMHRGKRVDPASIRRVALLTVEGENDDISGLGQTEAAQTICNSIPDHMRQHYMQPDVGHYGVFNGSRFRREIAPRI
VAFQRQHSRHAKPVKQLIKGGKSA

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48099; Mature: 48099

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYQFYELNHAMMAPWRTAADAMRLAFSNPMNPVSHTYFGRAAAAGLEVFERATRRYGKP
CCEEEEECCCHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
EFGLPETEIDGQPVAVRERIVWRQPFCNLIHFERRLPKDRAPDPKVLIVAPMSGHYATLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
RGTVAAMLPHSDVYITDWIDARMVPLSEGTFDLDDYIDYVIQMLHFLGPDAHVIGVCQPA
HHHHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHH
VPVLAAVALMEAEDDPLTPSTMTLMGGPIDTRINPTAVNQLAKERPLDWFRDNVLMPVPW
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEECCC
PQPGFMRLVYPGFLQLSGFMSMNLDRHLMAHKEFFAHLVKNDGDAADKHREFYDEYLAVM
CCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
DLTAEFYLQTVQVVFMQHALPKGEMMHRGKRVDPASIRRVALLTVEGENDDISGLGQTEA
HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCCCCHHH
AQTICNSIPDHMRQHYMQPDVGHYGVFNGSRFRREIAPRIVAFQRQHSRHAKPVKQLIKG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKSA
CCCC
>Mature Secondary Structure
MFYQFYELNHAMMAPWRTAADAMRLAFSNPMNPVSHTYFGRAAAAGLEVFERATRRYGKP
CCEEEEECCCHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
EFGLPETEIDGQPVAVRERIVWRQPFCNLIHFERRLPKDRAPDPKVLIVAPMSGHYATLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
RGTVAAMLPHSDVYITDWIDARMVPLSEGTFDLDDYIDYVIQMLHFLGPDAHVIGVCQPA
HHHHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHH
VPVLAAVALMEAEDDPLTPSTMTLMGGPIDTRINPTAVNQLAKERPLDWFRDNVLMPVPW
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEECCC
PQPGFMRLVYPGFLQLSGFMSMNLDRHLMAHKEFFAHLVKNDGDAADKHREFYDEYLAVM
CCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
DLTAEFYLQTVQVVFMQHALPKGEMMHRGKRVDPASIRRVALLTVEGENDDISGLGQTEA
HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCCCCHHH
AQTICNSIPDHMRQHYMQPDVGHYGVFNGSRFRREIAPRIVAFQRQHSRHAKPVKQLIKG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKSA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA