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The map label for this gene is recO

Identifier: 150395917

GI number: 150395917

Start: 745518

End: 746267

Strand: Direct

Name: recO

Synonym: Smed_0693

Alternate gene names: 150395917

Gene position: 745518-746267 (Clockwise)

Preceding gene: 150395916

Following gene: 150395919

Centisome position: 19.71

GC content: 64.13

Gene sequence:

>750_bases
ATGCAATGGAGCGATCAAGCCATAATTCTCGGCATCCGGAGGCATGGCGAAAGCTCTGTCATCGCGGAGGTGATGACGCC
CGGCCACGGGCGGCATCTCGGGCTCGTTCGCTCGGGCCGGTCGCGTGCCATGCAGCCCGTGCTGCAGCCGGGTAATTCCG
TGGAGGTGGTTTGGAGGGCGAGGCTCGACGAGCACCTCGGGGAATTCCGCGTCGAGCCGCTGCAATTGCGCGCCGCGCGG
CTGATCGAGACGGCAACCTCCGTTTACGGCATCCAGGCGCTTGGATCACTCCTGAGGCTTCTGCCGGAACGCGATCCGCA
CCCCCATCTCTACGAAGCGCTCGCCGTCATTGTCGATCACCTGCAGGATCCGGCAGACGCCGGCGAATTGTTCGTACGCT
TCGAACTCGCCGTGCTGAACGATCTCGGCTTCGGCCTCGACCTTTCGCGATGTGGAGCGACGGGCGCACGCAGCGAACTC
GTCTATGTATCGCCGAAATCCGGCCGCGCGATCTGTCGCGAAGCCGGCGCCCCCTATGCCGAGCGTATGCTTGCCCTTCC
GGATTTCCTGTCCGGACAAAACAGGGCGGCTGATCACGAAAGCCTCGCGGCGGCCTTCCGTCTCACCGCCTATTTCCTCA
ATCGACATGTTTATGAGCCGCGGGGCGTCGATGCCGCGTCGGCGCGGGACGGTTTCGTCCATGCGACCCTGAAGGCGTTG
AGGACAGCTTCGTCGGAGGCGCCGCAGTAA

Upstream 100 bases:

>100_bases
CGCGGCGCTGCCGGATTGCATCTGCCGCATCCGTCCGGGTTCGGAACGGCAGGCCTTTCTTCGCTTGATCACGTTTCCGC
CGCGGGTGTATTCCTCTTCC

Downstream 100 bases:

>100_bases
CGCGACGCCTCCGAAAGATCGGGTCTTCCGTCAACCGATCTTGCCGCCGCCCTGCCTGGTTACCGCAACGACGGCGGGAC
GCACCGGCATATCGTCACGG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MQWSDQAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRAMQPVLQPGNSVEVVWRARLDEHLGEFRVEPLQLRAAR
LIETATSVYGIQALGSLLRLLPERDPHPHLYEALAVIVDHLQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSEL
VYVSPKSGRAICREAGAPYAERMLALPDFLSGQNRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL
RTASSEAPQ

Sequences:

>Translated_249_residues
MQWSDQAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRAMQPVLQPGNSVEVVWRARLDEHLGEFRVEPLQLRAAR
LIETATSVYGIQALGSLLRLLPERDPHPHLYEALAVIVDHLQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSEL
VYVSPKSGRAICREAGAPYAERMLALPDFLSGQNRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL
RTASSEAPQ
>Mature_249_residues
MQWSDQAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRAMQPVLQPGNSVEVVWRARLDEHLGEFRVEPLQLRAAR
LIETATSVYGIQALGSLLRLLPERDPHPHLYEALAVIVDHLQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSEL
VYVSPKSGRAICREAGAPYAERMLALPDFLSGQNRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL
RTASSEAPQ

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_SINMW (A6U7B9)

Other databases:

- EMBL:   CP000738
- RefSeq:   YP_001326384.1
- ProteinModelPortal:   A6U7B9
- STRING:   A6U7B9
- GeneID:   5321530
- GenomeReviews:   CP000738_GR
- KEGG:   smd:Smed_0693
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   SMED366394:SMED_0693-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27244; Mature: 27244

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWSDQAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRAMQPVLQPGNSVEVVWRA
CCCCCCEEEEEEECCCCHHHHHHHHCCCCCCEEHHHHCCHHHHHHHHHCCCCCEEEHHHH
RLDEHLGEFRVEPLQLRAARLIETATSVYGIQALGSLLRLLPERDPHPHLYEALAVIVDH
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSELVYVSPKSGRAICREAGAPYA
HCCCCCCCCEEHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEECCCCCHHHHHHCCCCHH
ERMLALPDFLSGQNRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL
HHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
RTASSEAPQ
HHHCCCCCC
>Mature Secondary Structure
MQWSDQAIILGIRRHGESSVIAEVMTPGHGRHLGLVRSGRSRAMQPVLQPGNSVEVVWRA
CCCCCCEEEEEEECCCCHHHHHHHHCCCCCCEEHHHHCCHHHHHHHHHCCCCCEEEHHHH
RLDEHLGEFRVEPLQLRAARLIETATSVYGIQALGSLLRLLPERDPHPHLYEALAVIVDH
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LQDPADAGELFVRFELAVLNDLGFGLDLSRCGATGARSELVYVSPKSGRAICREAGAPYA
HCCCCCCCCEEHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEECCCCCHHHHHHCCCCHH
ERMLALPDFLSGQNRAADHESLAAAFRLTAYFLNRHVYEPRGVDAASARDGFVHATLKAL
HHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
RTASSEAPQ
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA