Click here to switch to the map view.

The map label for this gene is 150395892

Identifier: 150395892

GI number: 150395892

Start: 719074

End: 720111

Strand: Direct

Name: 150395892

Synonym: Smed_0668

Alternate gene names: NA

Gene position: 719074-720111 (Clockwise)

Preceding gene: 150395891

Following gene: 150395897

Centisome position: 19.01

GC content: 60.21

Gene sequence:

>1038_bases
ATGAACATCAAGAGCCTTCTTCTCGGCTCCGCTGCTGCTCTCGCAGCAGTATCCGGCGCTCAGGCTGCCGACGCGATCGT
CGCTGCCGAGCCGGAGCCCATGGAATACGTTCGCGTTTGCGACGCTTTCGGCACTGGCTACTTCTACATCCCCGGCACGG
AAACCTGCCTCAAGATCAGCGGCTTCATCCGCGTTCAGGGCGAATTCGGCCGTGACGAAGCTGACGACCGCTGGAACCAG
GAAGACTTCGGTGGTCAGTCCACGTCGGACTGGGACATGTTCTCCCGCGCTTACATCGCGTTTGACGCGAAGAGCGACAC
CGAATACGGCACGCTCACCGGCTTCTTCGCTGCTGAGTTCAACGCTGACAACGACACCGACGAAGGCGACAGCCTGATCG
ACGTCGATGAAGCCTACATCCAGCTCGGCGGCTTCAAGGCCGGCTTCTTCTACAGCTGGTGGGATAAGGGTCTGAACGGC
GAAACCGACTCGCTCGGCAACGTCACCGAGTTCAACTCGATTGCCTACATCTATGACGGTGGCACGTTCCAGGCCGGTAT
CTCGGTCGACGAACTCGAAGGCACCAGCACCAAGGCCAACGGCGTTGGCGTTACCGGTATCGTTTCCGCTTCGCTCGGCG
GCGTTGCTTTCGACTTGCTCGGCAGCTACGACACCGAATGGGAAGAAGGCGCGATCCGCGCATTGCTCTCCGCAGACCTC
GGCCCGGGCACATTCCAGATCGCTGGCATCTGGGCATCCGACCCGAACGCCTACTGGGCTGACTCCGAGTGGACCGTTGC
TGCTTCGTACCGCTTCAACGCTACCGACAAGTTCGCAATCACCCCGGCCGCTCAGTACTGGGGCAGCCTGCAAGATTCGA
ACACCAGCTTCGGTAACGACGATCAGTGGCGCGTTGGTATCACGACCGACTACGACATCACGGAAGGTCTCGCTACCCGC
TTCACGATCAACTACACCGATCCGGATGCTGGTGACGAGTACGTCAGCGGCTTCCTTCGCCTGCAGCGTGACTTCTAA

Upstream 100 bases:

>100_bases
TTGATCGTCCGACTTCTTGAACTTTGGGGATGGGGCAGGGAACGCTGTCCTTCAGCAAAAAAACCCAGACCCGTTTGAAA
CTTTTGACTGGAGGTCAGAA

Downstream 100 bases:

>100_bases
TCTGACCTGACCTCGGTCAGTGGAAGGAAAGCCCGGCTCAATGCCGGGCTTTCTCTTTTTTAAGGTATTGCTTGACGACC
CCGCCCGATGCAGTCGGTTT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNIKSLLLGSAAALAAVSGAQAADAIVAAEPEPMEYVRVCDAFGTGYFYIPGTETCLKISGFIRVQGEFGRDEADDRWNQ
EDFGGQSTSDWDMFSRAYIAFDAKSDTEYGTLTGFFAAEFNADNDTDEGDSLIDVDEAYIQLGGFKAGFFYSWWDKGLNG
ETDSLGNVTEFNSIAYIYDGGTFQAGISVDELEGTSTKANGVGVTGIVSASLGGVAFDLLGSYDTEWEEGAIRALLSADL
GPGTFQIAGIWASDPNAYWADSEWTVAASYRFNATDKFAITPAAQYWGSLQDSNTSFGNDDQWRVGITTDYDITEGLATR
FTINYTDPDAGDEYVSGFLRLQRDF

Sequences:

>Translated_345_residues
MNIKSLLLGSAAALAAVSGAQAADAIVAAEPEPMEYVRVCDAFGTGYFYIPGTETCLKISGFIRVQGEFGRDEADDRWNQ
EDFGGQSTSDWDMFSRAYIAFDAKSDTEYGTLTGFFAAEFNADNDTDEGDSLIDVDEAYIQLGGFKAGFFYSWWDKGLNG
ETDSLGNVTEFNSIAYIYDGGTFQAGISVDELEGTSTKANGVGVTGIVSASLGGVAFDLLGSYDTEWEEGAIRALLSADL
GPGTFQIAGIWASDPNAYWADSEWTVAASYRFNATDKFAITPAAQYWGSLQDSNTSFGNDDQWRVGITTDYDITEGLATR
FTINYTDPDAGDEYVSGFLRLQRDF
>Mature_345_residues
MNIKSLLLGSAAALAAVSGAQAADAIVAAEPEPMEYVRVCDAFGTGYFYIPGTETCLKISGFIRVQGEFGRDEADDRWNQ
EDFGGQSTSDWDMFSRAYIAFDAKSDTEYGTLTGFFAAEFNADNDTDEGDSLIDVDEAYIQLGGFKAGFFYSWWDKGLNG
ETDSLGNVTEFNSIAYIYDGGTFQAGISVDELEGTSTKANGVGVTGIVSASLGGVAFDLLGSYDTEWEEGAIRALLSADL
GPGTFQIAGIWASDPNAYWADSEWTVAASYRFNATDKFAITPAAQYWGSLQDSNTSFGNDDQWRVGITTDYDITEGLATR
FTINYTDPDAGDEYVSGFLRLQRDF

Specific function: May act as an outer membrane pore [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 37362; Mature: 37362

Theoretical pI: Translated: 3.66; Mature: 3.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKSLLLGSAAALAAVSGAQAADAIVAAEPEPMEYVRVCDAFGTGYFYIPGTETCLKIS
CCHHHHHHCCHHHHHHHCCCCHHCEEEECCCCHHHHHHHHHHHCCCEEEECCCCEEEEEE
GFIRVQGEFGRDEADDRWNQEDFGGQSTSDWDMFSRAYIAFDAKSDTEYGTLTGFFAAEF
EEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHEEEEEEEECCCCCCCCEEEEEEEEEE
NADNDTDEGDSLIDVDEAYIQLGGFKAGFFYSWWDKGLNGETDSLGNVTEFNSIAYIYDG
CCCCCCCCCCCEEECCHHHEEECCEEECCEEHHHHCCCCCCCCCCCCEEECCCEEEEEEC
GTFQAGISVDELEGTSTKANGVGVTGIVSASLGGVAFDLLGSYDTEWEEGAIRALLSADL
CEEEECCCHHHCCCCCCCCCCCCEEEEEHHCCCCEEEEHHCCCCCCHHHHHHHHHHHCCC
GPGTFQIAGIWASDPNAYWADSEWTVAASYRFNATDKFAITPAAQYWGSLQDSNTSFGND
CCCEEEEEEEEECCCCCEECCCCEEEEEEEEECCCCCEEECCHHHHCCCCCCCCCCCCCC
DQWRVGITTDYDITEGLATRFTINYTDPDAGDEYVSGFLRLQRDF
CCEEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIKSLLLGSAAALAAVSGAQAADAIVAAEPEPMEYVRVCDAFGTGYFYIPGTETCLKIS
CCHHHHHHCCHHHHHHHCCCCHHCEEEECCCCHHHHHHHHHHHCCCEEEECCCCEEEEEE
GFIRVQGEFGRDEADDRWNQEDFGGQSTSDWDMFSRAYIAFDAKSDTEYGTLTGFFAAEF
EEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHEEEEEEEECCCCCCCCEEEEEEEEEE
NADNDTDEGDSLIDVDEAYIQLGGFKAGFFYSWWDKGLNGETDSLGNVTEFNSIAYIYDG
CCCCCCCCCCCEEECCHHHEEECCEEECCEEHHHHCCCCCCCCCCCCEEECCCEEEEEEC
GTFQAGISVDELEGTSTKANGVGVTGIVSASLGGVAFDLLGSYDTEWEEGAIRALLSADL
CEEEECCCHHHCCCCCCCCCCCCEEEEEHHCCCCEEEEHHCCCCCCHHHHHHHHHHHCCC
GPGTFQIAGIWASDPNAYWADSEWTVAASYRFNATDKFAITPAAQYWGSLQDSNTSFGND
CCCEEEEEEEEECCCCCEECCCCEEEEEEEEECCCCCEEECCHHHHCCCCCCCCCCCCCC
DQWRVGITTDYDITEGLATRFTINYTDPDAGDEYVSGFLRLQRDF
CCEEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]