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The map label for this gene is sodB [H]

Identifier: 150395811

GI number: 150395811

Start: 635936

End: 636538

Strand: Direct

Name: sodB [H]

Synonym: Smed_0587

Alternate gene names: 150395811

Gene position: 635936-636538 (Clockwise)

Preceding gene: 150395809

Following gene: 150395813

Centisome position: 16.82

GC content: 56.22

Gene sequence:

>603_bases
ATGGCTTTCGAATTGCCGAACCTTCCCTATGACTACGATGCGCTCGCACCCTATATGTCGCGCGAAACGCTCGAATACCA
TCACGACAAGCACCACCTCGCTTACGTGACGAACGGCAACAAGCTCGCCGAGGAAGCCGGTCTTTCCGATCTTTCGCTGG
AAGATATCGTCAAGAAATCCTACGGCACCAACCAGCCGTTGTTCAACAATGCCGGCCAGCACTACAACCATGTCCACTTC
TGGAAGTGGATGAAAAAGGGTGGCGGCGGCACCAGTCTTCCCGGCAAGCTTGACGCCGCGATCAAGTCGGACCTTGGCGG
CTACGACAAGTTCCGCGCCGATTTTGTTGCTGCCGGTACGGGCCAGTTCGGCTCCGGCTGGGCCTGGCTTTCGGTAAAGA
ACGGCAAGCTGGAAATCTCCAAGACCCCGAACGGCGAAAATCCGCTGGTACACGGCGCAACCCCGATCCTGGGCGTCGAT
GTGTGGGAACATTCCTATTACATCGACTATCGCAACGCGCGCCCGAAATACCTCGAAGCCTTCGTCGACAATCTCATCAA
CTGGGATTACGTCCTCGAACTGTACGAAGCGGCTGCAAAGTAA

Upstream 100 bases:

>100_bases
CGAAATTTTGGCGTTGCATCGGTTGCCTCCCCGCAAGGGGGTGCCTATGTTCCGCTGACAGATTTCCCCGATGAAATCCA
TGCCAAGAGGAGATGCCACA

Downstream 100 bases:

>100_bases
GCACCGAGTCTTTGATTGCGAGTTGCTGGCGGGGGGAATGCTGTCGGTTGTGCCTTTTGCAAAGAGCCCCGAACCGACCC
TCATCCGCCTGTCGGCATCT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAFELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSDLSLEDIVKKSYGTNQPLFNNAGQHYNHVHF
WKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFVAAGTGQFGSGWAWLSVKNGKLEISKTPNGENPLVHGATPILGVD
VWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAAAK

Sequences:

>Translated_200_residues
MAFELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSDLSLEDIVKKSYGTNQPLFNNAGQHYNHVHF
WKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFVAAGTGQFGSGWAWLSVKNGKLEISKTPNGENPLVHGATPILGVD
VWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAAAK
>Mature_199_residues
AFELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSDLSLEDIVKKSYGTNQPLFNNAGQHYNHVHFW
KWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFVAAGTGQFGSGWAWLSVKNGKLEISKTPNGENPLVHGATPILGVDV
WEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAAAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=44, Blast_Score=154, Evalue=7e-38,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=44, Blast_Score=154, Evalue=7e-38,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=38, Blast_Score=125, Evalue=3e-29,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=51.2953367875648, Blast_Score=184, Evalue=3e-48,
Organism=Escherichia coli, GI1790342, Length=211, Percent_Identity=44.5497630331754, Blast_Score=171, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=38.6934673366834, Blast_Score=133, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=36.0406091370558, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=38.5, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22472; Mature: 22341

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSDLSLEDIVKKS
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHH
YGTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFVAAGT
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHEEEECC
GQFGSGWAWLSVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEEECCCCHHHHHH
FVDNLINWDYVLELYEAAAK
HHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AFELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSDLSLEDIVKKS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHH
YGTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFVAAGT
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHEEEECC
GQFGSGWAWLSVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEEECCCCHHHHHH
FVDNLINWDYVLELYEAAAK
HHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]