| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is ppdK [H]
Identifier: 150395772
GI number: 150395772
Start: 593658
End: 596354
Strand: Direct
Name: ppdK [H]
Synonym: Smed_0548
Alternate gene names: 150395772
Gene position: 593658-596354 (Clockwise)
Preceding gene: 150395771
Following gene: 150395775
Centisome position: 15.7
GC content: 63.0
Gene sequence:
>2697_bases ATGGCGAAATGGGTATATACCTTTGGCGCGGGAGAGGCCGAAGGGAGTGCGGAAGATCGCGACCGGCTGGGCGGCAAGGG TGCCAATCTCGCTGAAATGTGCAATCTCGGGCTGCCGGTGCCGCCTGGTCTGACGATCGTCACGGCCGCCTGCAACAGCT ATCTCGAGAACGGTTGCAGCATGCCGGAGGGATTGCGCGAGCAGGTCCGTGAGGGCATCGCCCGGATGGAGAAAATCACT GGACGCGTCTTCGGCGATACCAATCGTCCGCTGCTTCTGTCGGTCCGTTCAGGCGCGCGTGCGTCCATGCCGGGGATGAT GGACACGGTCCTGAACCTCGGCCTCAACGATCAGTCCGTGCATGCGCTCGGGCACGATGCCGGCGACGCGCGCTTTGCCT GGGACAGCTACCGCCGCTTCATCCAGATGTATGGCGATGTGGTGCTGGGGGTAGATCACGAAGTCTTCGAGGAAATCCTG GAAGATGAGAAGGCGCGCCTCGGCCACGAGCAGGATACGGAACTCTCCGCCGTCGAATGGCAGCACGTGATCGCGCGCTA CAAGGAGGCTATCGAGGAAGTGCTCGGCATGCCTTTTCCGCAGGAACCTGAAATCCAGCTCTGGGGTGCGATCGGTGCCG TCTTTTCCAGCTGGATGAACCCGCGCGCCATTACCTACCGCCATCTTCACGGCATACCGGCCGGCTGGGGCACCGCCGTC AATGTGCAGGCCATGGTCTTCGGCAATCTCGGCAATTCCTCCGCGACCGGGGTCGCCTTCACGCGCAACCCCTCGACCGG CGTAAAAGAGCTTTATGGCGAGTTTCTCGTCAATGCTCAGGGCGAGGACGTCGTCGCCGGCATCCGCACGCCGCAGAACA TAACCGAGGAAGCCCGTATCGCATCCGGTTCGGACAAGCCGTCCCTGCAAAAGCTGATGCCGGAGGCCTTTGCCGAGTTC GAAAGGATCTGCAACGCACTCGAGCGACACTATCGCGACATGCAGGACATCGAATTCACGATCGAGCGCGGCAAGCTGTG GATGCTGCAGACGCGTTCCGGCAAGCGGACGGCCAAGTCAGCGCTGAAGATTGCCGTCGACATGGCAGAGGAGGGGCTGA TTTCCAAGGAGGAGGCCGTTGCGCGCATCGATCCTGCTTCGCTCGACCAGCTTCTGCATCCGACTATCGACCCCCACGCC CGCCGCGACATCATCGGCTCCGGCCTGCCGGCCTCGCCGGGCGCGGCGACGGGCGAGATCGTCTTTACCTCTGACGAGGC GGTACAGGCCGTCAAGGAGGGCCGCAAGGTCATCCTTGTCCGGGTGGAGACGAGCCCGGAAGACATTCATGGCATGCATG CTGCCGAAGGCATCCTGACGACGCGGGGCGGTATGACGAGCCATGCGGCCGTCGTCGCCCGCGGCATGGGGATCCCTTGC GTGTCGGGCGCGGGCAGCATCCGCGTCGATCAGCGAAACGAGCTCCTGATCGCCGCGAGCGTAACGCTCAAGAAAGGAGA CGTGATCACCATAGACGGCTCCTCGGGCCAGGTGCTGAAGGGTGAAATCCCGATGCTGCAGCCGGAGCTTTCAGGCGATT TCGGTAAGATCATGCAATGGGCCGATGCAAGCCGCCGCATGACCGTGCGAACAAATGCAGAGACCCCTGCCGATGCCCGC GCCGCCCGCTCCTTCGGTGCCGAGGGCATCGGCCTCTGCCGTACCGAGCACATGTTTTTCGAGGACGACCGCATCAATGT GATGCGTGAAATGATCCTGGCGGAAGACGAGGCGGGCCGGCGTGCCGCACTTGCCAAACTTCTGCCGATGCAGCGTTCAG ACTTCGTCGAGCTCTTTTCCATCATGCACGGACTGCCGGTTACGATCCGTCTTCTCGACCCGCCGCTCCATGAGTTCCTG CCGAAGACCGACGAAGAGATCGCAGAGGTTGCGCGCGGGTTGGCGCTCGACCCGGCGGATTTGCGCCAGCGGGTCGATGC CTTGCATGAGTTCAATCCGATGCTCGGGCATCGCGGCTGCCGCCTTGCGATTTCCTATCCGGAGATTGCCGAGATGCAGG CCCGGGCAATATTCGAGGCGGCGGTCAAGGCTGCTGAGGATACCGGCGCCGCCGTCGTTCCCGAAATCATGGTGCCGCTT GTCGGGCTGCGCGCCGAGCTCGACTATGTAAAGGCTCGCATCGAGGCTGTCGCCAATGAGGTCATCGACGAGGCCGGCGT GAACATCGATTACCTGATCGGCACGATGATCGAGCTGCCCCGGGCAGCGCTGCGGGCGGGCGCGATCGCCGAGTCAGCCG ACTTCTTTTCTTTCGGCACCAACGATCTGACGCAGACGACCTTCGGCATTTCGCGTGACGACGCCGCCCTGTTCCTGGCC ACTTACCAGCAGAAGGGCATCATCGAGCAGGATCCCTTCGTTTCGCTCGACTTCGAAGGCGTGGGCGAATTGATCCAGAT CGCGGCGGAGCGGGGGCGGCGGACGAAGAACGGCTTGAAACTCGGTATCTGCGGCGAACACGGCGGCGATCCCGCCTCGA TACGCTTCTGCGAAGAGGCGGGCTTGGATTACGTGTCCTGCTCCCCTTTTCGGGTACCGATCGCGAGACTTGCGGCCGCG CAAGCGACGATCAACGGCCGCGACGCCGCCAAGGTTCAAGCTCTGGCAGCGAGCTGA
Upstream 100 bases:
>100_bases ATCGTGATCGAATTAATACGTTAGAGCGGGATGCGGGCGGAAAACCGTGCACACCTTTCCTCATCCCGCTCTAGACGACT GTTTCGGGTGGAGAACAGGC
Downstream 100 bases:
>100_bases TCCCACACGTGACGGCGATCCCCCTCATTTGGCCTGCTCCAGTCTGAGTTTGCGACCGGCAGAGCCGGTCAACGCCAATA ATACGGACCGTGCAGGAAGA
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 898; Mature: 897
Protein sequence:
>898_residues MAKWVYTFGAGEAEGSAEDRDRLGGKGANLAEMCNLGLPVPPGLTIVTAACNSYLENGCSMPEGLREQVREGIARMEKIT GRVFGDTNRPLLLSVRSGARASMPGMMDTVLNLGLNDQSVHALGHDAGDARFAWDSYRRFIQMYGDVVLGVDHEVFEEIL EDEKARLGHEQDTELSAVEWQHVIARYKEAIEEVLGMPFPQEPEIQLWGAIGAVFSSWMNPRAITYRHLHGIPAGWGTAV NVQAMVFGNLGNSSATGVAFTRNPSTGVKELYGEFLVNAQGEDVVAGIRTPQNITEEARIASGSDKPSLQKLMPEAFAEF ERICNALERHYRDMQDIEFTIERGKLWMLQTRSGKRTAKSALKIAVDMAEEGLISKEEAVARIDPASLDQLLHPTIDPHA RRDIIGSGLPASPGAATGEIVFTSDEAVQAVKEGRKVILVRVETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC VSGAGSIRVDQRNELLIAASVTLKKGDVITIDGSSGQVLKGEIPMLQPELSGDFGKIMQWADASRRMTVRTNAETPADAR AARSFGAEGIGLCRTEHMFFEDDRINVMREMILAEDEAGRRAALAKLLPMQRSDFVELFSIMHGLPVTIRLLDPPLHEFL PKTDEEIAEVARGLALDPADLRQRVDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVKAAEDTGAAVVPEIMVPL VGLRAELDYVKARIEAVANEVIDEAGVNIDYLIGTMIELPRAALRAGAIAESADFFSFGTNDLTQTTFGISRDDAALFLA TYQQKGIIEQDPFVSLDFEGVGELIQIAAERGRRTKNGLKLGICGEHGGDPASIRFCEEAGLDYVSCSPFRVPIARLAAA QATINGRDAAKVQALAAS
Sequences:
>Translated_898_residues MAKWVYTFGAGEAEGSAEDRDRLGGKGANLAEMCNLGLPVPPGLTIVTAACNSYLENGCSMPEGLREQVREGIARMEKIT GRVFGDTNRPLLLSVRSGARASMPGMMDTVLNLGLNDQSVHALGHDAGDARFAWDSYRRFIQMYGDVVLGVDHEVFEEIL EDEKARLGHEQDTELSAVEWQHVIARYKEAIEEVLGMPFPQEPEIQLWGAIGAVFSSWMNPRAITYRHLHGIPAGWGTAV NVQAMVFGNLGNSSATGVAFTRNPSTGVKELYGEFLVNAQGEDVVAGIRTPQNITEEARIASGSDKPSLQKLMPEAFAEF ERICNALERHYRDMQDIEFTIERGKLWMLQTRSGKRTAKSALKIAVDMAEEGLISKEEAVARIDPASLDQLLHPTIDPHA RRDIIGSGLPASPGAATGEIVFTSDEAVQAVKEGRKVILVRVETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC VSGAGSIRVDQRNELLIAASVTLKKGDVITIDGSSGQVLKGEIPMLQPELSGDFGKIMQWADASRRMTVRTNAETPADAR AARSFGAEGIGLCRTEHMFFEDDRINVMREMILAEDEAGRRAALAKLLPMQRSDFVELFSIMHGLPVTIRLLDPPLHEFL PKTDEEIAEVARGLALDPADLRQRVDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVKAAEDTGAAVVPEIMVPL VGLRAELDYVKARIEAVANEVIDEAGVNIDYLIGTMIELPRAALRAGAIAESADFFSFGTNDLTQTTFGISRDDAALFLA TYQQKGIIEQDPFVSLDFEGVGELIQIAAERGRRTKNGLKLGICGEHGGDPASIRFCEEAGLDYVSCSPFRVPIARLAAA QATINGRDAAKVQALAAS >Mature_897_residues AKWVYTFGAGEAEGSAEDRDRLGGKGANLAEMCNLGLPVPPGLTIVTAACNSYLENGCSMPEGLREQVREGIARMEKITG RVFGDTNRPLLLSVRSGARASMPGMMDTVLNLGLNDQSVHALGHDAGDARFAWDSYRRFIQMYGDVVLGVDHEVFEEILE DEKARLGHEQDTELSAVEWQHVIARYKEAIEEVLGMPFPQEPEIQLWGAIGAVFSSWMNPRAITYRHLHGIPAGWGTAVN VQAMVFGNLGNSSATGVAFTRNPSTGVKELYGEFLVNAQGEDVVAGIRTPQNITEEARIASGSDKPSLQKLMPEAFAEFE RICNALERHYRDMQDIEFTIERGKLWMLQTRSGKRTAKSALKIAVDMAEEGLISKEEAVARIDPASLDQLLHPTIDPHAR RDIIGSGLPASPGAATGEIVFTSDEAVQAVKEGRKVILVRVETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPCV SGAGSIRVDQRNELLIAASVTLKKGDVITIDGSSGQVLKGEIPMLQPELSGDFGKIMQWADASRRMTVRTNAETPADARA ARSFGAEGIGLCRTEHMFFEDDRINVMREMILAEDEAGRRAALAKLLPMQRSDFVELFSIMHGLPVTIRLLDPPLHEFLP KTDEEIAEVARGLALDPADLRQRVDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVKAAEDTGAAVVPEIMVPLV GLRAELDYVKARIEAVANEVIDEAGVNIDYLIGTMIELPRAALRAGAIAESADFFSFGTNDLTQTTFGISRDDAALFLAT YQQKGIIEQDPFVSLDFEGVGELIQIAAERGRRTKNGLKLGICGEHGGDPASIRFCEEAGLDYVSCSPFRVPIARLAAAQ ATINGRDAAKVQALAAS
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=482, Percent_Identity=25.3112033195021, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1787994, Length=707, Percent_Identity=24.1867043847242, Blast_Score=104, Evalue=3e-23, Organism=Escherichia coli, GI1789193, Length=453, Percent_Identity=25.60706401766, Blast_Score=96, Evalue=9e-21, Organism=Escherichia coli, GI48994992, Length=468, Percent_Identity=23.9316239316239, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1788726, Length=470, Percent_Identity=22.9787234042553, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 97334; Mature: 97203
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKWVYTFGAGEAEGSAEDRDRLGGKGANLAEMCNLGLPVPPGLTIVTAACNSYLENGCS CCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC MPEGLREQVREGIARMEKITGRVFGDTNRPLLLSVRSGARASMPGMMDTVLNLGLNDQSV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCHH HALGHDAGDARFAWDSYRRFIQMYGDVVLGVDHEVFEEILEDEKARLGHEQDTELSAVEW HHCCCCCCCCCCCHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH QHVIARYKEAIEEVLGMPFPQEPEIQLWGAIGAVFSSWMNPRAITYRHLHGIPAGWGTAV HHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCEE NVQAMVFGNLGNSSATGVAFTRNPSTGVKELYGEFLVNAQGEDVVAGIRTPQNITEEARI EEEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH ASGSDKPSLQKLMPEAFAEFERICNALERHYRDMQDIEFTIERGKLWMLQTRSGKRTAKS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCEEEEEECCCCHHHHH ALKIAVDMAEEGLISKEEAVARIDPASLDQLLHPTIDPHARRDIIGSGLPASPGAATGEI HHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEE VFTSDEAVQAVKEGRKVILVRVETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC EEECHHHHHHHHCCCEEEEEEEECCCHHHCCHHHHCCCEEECCCCCHHHHHHHHCCCCCE VSGAGSIRVDQRNELLIAASVTLKKGDVITIDGSSGQVLKGEIPMLQPELSGDFGKIMQW ECCCCCEEECCCCCEEEEEEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHH ADASRRMTVRTNAETPADARAARSFGAEGIGLCRTEHMFFEDDRINVMREMILAEDEAGR HCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHHCCCCCH RAALAKLLPMQRSDFVELFSIMHGLPVTIRLLDPPLHEFLPKTDEEIAEVARGLALDPAD HHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCHHHHHHHHHCCCCCHHH LRQRVDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVKAAEDTGAAVVPEIMVPL HHHHHHHHHHCCHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VGLRAELDYVKARIEAVANEVIDEAGVNIDYLIGTMIELPRAALRAGAIAESADFFSFGT HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHCCCCHHCCCC NDLTQTTFGISRDDAALFLATYQQKGIIEQDPFVSLDFEGVGELIQIAAERGRRTKNGLK CCHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCE LGICGEHGGDPASIRFCEEAGLDYVSCSPFRVPIARLAAAQATINGRDAAKVQALAAS EEECCCCCCCCHHEEEHHHCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCC >Mature Secondary Structure AKWVYTFGAGEAEGSAEDRDRLGGKGANLAEMCNLGLPVPPGLTIVTAACNSYLENGCS CEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC MPEGLREQVREGIARMEKITGRVFGDTNRPLLLSVRSGARASMPGMMDTVLNLGLNDQSV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCHH HALGHDAGDARFAWDSYRRFIQMYGDVVLGVDHEVFEEILEDEKARLGHEQDTELSAVEW HHCCCCCCCCCCCHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH QHVIARYKEAIEEVLGMPFPQEPEIQLWGAIGAVFSSWMNPRAITYRHLHGIPAGWGTAV HHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCEE NVQAMVFGNLGNSSATGVAFTRNPSTGVKELYGEFLVNAQGEDVVAGIRTPQNITEEARI EEEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH ASGSDKPSLQKLMPEAFAEFERICNALERHYRDMQDIEFTIERGKLWMLQTRSGKRTAKS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCEEEEEECCCCHHHHH ALKIAVDMAEEGLISKEEAVARIDPASLDQLLHPTIDPHARRDIIGSGLPASPGAATGEI HHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEE VFTSDEAVQAVKEGRKVILVRVETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC EEECHHHHHHHHCCCEEEEEEEECCCHHHCCHHHHCCCEEECCCCCHHHHHHHHCCCCCE VSGAGSIRVDQRNELLIAASVTLKKGDVITIDGSSGQVLKGEIPMLQPELSGDFGKIMQW ECCCCCEEECCCCCEEEEEEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHH ADASRRMTVRTNAETPADARAARSFGAEGIGLCRTEHMFFEDDRINVMREMILAEDEAGR HCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHHCCCCCH RAALAKLLPMQRSDFVELFSIMHGLPVTIRLLDPPLHEFLPKTDEEIAEVARGLALDPAD HHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCHHHHHHHHHCCCCCHHH LRQRVDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVKAAEDTGAAVVPEIMVPL HHHHHHHHHHCCHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VGLRAELDYVKARIEAVANEVIDEAGVNIDYLIGTMIELPRAALRAGAIAESADFFSFGT HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHCCCCHHCCCC NDLTQTTFGISRDDAALFLATYQQKGIIEQDPFVSLDFEGVGELIQIAAERGRRTKNGLK CCHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCE LGICGEHGGDPASIRFCEEAGLDYVSCSPFRVPIARLAAAQATINGRDAAKVQALAAS EEECCCCCCCCHHEEEHHHCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]