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The map label for this gene is secD [C]

Identifier: 150399587

GI number: 150399587

Start: 865485

End: 866651

Strand: Reverse

Name: secD [C]

Synonym: Mevan_0836

Alternate gene names: 150399587

Gene position: 866651-865485 (Counterclockwise)

Preceding gene: 150399588

Following gene: 150399586

Centisome position: 50.39

GC content: 36.68

Gene sequence:

>1167_bases
ATGAAATTACTAAAAGATCCTAAAGTTGCAATTCTTTTAGTGTTTGTTCTAGCCTCCGTACTTCTTCTTACATTCAAAGG
ACTTTCCTTTGGTGTAGATTTAAGTGGTGGCTCAACAATAGTATTAAACACTGAAAAACCATTAAGTGACGCTGAAATGG
TTTCAGTAACTGAAATTTTGACAAGCAGGCTAAATACCAATGGATTAAGTGATGTTAGAATTTACCCCCGGGGTAGTGAT
GAAATAGTAATTGAAATACCAAAAAGTGCTGATTTAGAGCGAATTGAACGAATTTTAACTCAGCAAGGGGTATTTATAGC
AACAATTGATAATAAAACTGCATATGTTGGACAGGATATATCCTACGTTGAAGAACCAAGAATGACTGCATCAGGATATG
GTGTAGGATTTAGATTATCCTCAGATGGCGCAAATAACTTTGCAGAAGTTGCATACGGAAAAGGGGGGTATCCTGTAGAA
CTATACATGGATGGAAATCTTGTAAGTGCTCCGATACTTTCTCCCGACCTTGCAGATGGTAGGCCCCATCAAAGTCAGGT
AATTACCGTAGCAGGGGCTAGCCCAACAAGAGAGGATATTGAAAAGGCATGGGTAATATATACTGCTTTGAAATCTGGTT
CGCTTCCAGTAAAAGTTGAAATAGCATATATAAGTTCTGTTTCACCAACATTGGGTGCAGAATTTATAAAAGGGGCATTA
ATTGCAGGATTATTCGCATTCCTTGCAGTTGCAACAGTTATTTCATTTAGATACAAAAACCCGAAAATCGTGCTACCGAT
ATTAATAACAGGATTTTCAGAAGTCCTTCTCATACTGGGTTTTGCATCACTTATTGATTGGAAACTTGATTTGGCATCAA
TTGCAGGGATTGTTGCAGCAGTAGGTACTGGTGTAGATCACCAAATTGTAATTACTGACGAAACAATTGCTGGAGAATCA
AAAAAAGTTACAAAAAATATTAAAAGAGCTTTCTTTATTATATTTGGTGCAGCCGCTACAACCATTGCAGCAATGCTTCC
TTTATTTGTAATGGGTATCGGAATGCTCAAAGGATTTGCGATAACAACAATTGCAGGTGTTTTAATGGGTATATTAATAT
CAAGACCTGCATTTGCTAGAATAATGCAATATGTACTAAAACACTAA

Upstream 100 bases:

>100_bases
GGATTAATTGGAGATTTAATGCTTACATGGCTTACAAACGTAGGAATATTGAGATACTACGTAACAGAATATAAAAAGGA
GAGGAATTAGGAGGGATACC

Downstream 100 bases:

>100_bases
GATATAGTCAAAATCGAACTAATTAACGGCATCAAAAGAATAACTATAAAAGATTAAAAAAATAACCAATTATTTTATTT
TTTCGGGGATTGAATGAGCA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKLLKDPKVAILLVFVLASVLLLTFKGLSFGVDLSGGSTIVLNTEKPLSDAEMVSVTEILTSRLNTNGLSDVRIYPRGSD
EIVIEIPKSADLERIERILTQQGVFIATIDNKTAYVGQDISYVEEPRMTASGYGVGFRLSSDGANNFAEVAYGKGGYPVE
LYMDGNLVSAPILSPDLADGRPHQSQVITVAGASPTREDIEKAWVIYTALKSGSLPVKVEIAYISSVSPTLGAEFIKGAL
IAGLFAFLAVATVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIVAAVGTGVDHQIVITDETIAGES
KKVTKNIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMGILISRPAFARIMQYVLKH

Sequences:

>Translated_388_residues
MKLLKDPKVAILLVFVLASVLLLTFKGLSFGVDLSGGSTIVLNTEKPLSDAEMVSVTEILTSRLNTNGLSDVRIYPRGSD
EIVIEIPKSADLERIERILTQQGVFIATIDNKTAYVGQDISYVEEPRMTASGYGVGFRLSSDGANNFAEVAYGKGGYPVE
LYMDGNLVSAPILSPDLADGRPHQSQVITVAGASPTREDIEKAWVIYTALKSGSLPVKVEIAYISSVSPTLGAEFIKGAL
IAGLFAFLAVATVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIVAAVGTGVDHQIVITDETIAGES
KKVTKNIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMGILISRPAFARIMQYVLKH
>Mature_388_residues
MKLLKDPKVAILLVFVLASVLLLTFKGLSFGVDLSGGSTIVLNTEKPLSDAEMVSVTEILTSRLNTNGLSDVRIYPRGSD
EIVIEIPKSADLERIERILTQQGVFIATIDNKTAYVGQDISYVEEPRMTASGYGVGFRLSSDGANNFAEVAYGKGGYPVE
LYMDGNLVSAPILSPDLADGRPHQSQVITVAGASPTREDIEKAWVIYTALKSGSLPVKVEIAYISSVSPTLGAEFIKGAL
IAGLFAFLAVATVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIVAAVGTGVDHQIVITDETIAGES
KKVTKNIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMGILISRPAFARIMQYVLKH

Specific function: Involved In Protein Export. [C]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=377, Percent_Identity=25.9946949602122, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 41433; Mature: 41433

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLKDPKVAILLVFVLASVLLLTFKGLSFGVDLSGGSTIVLNTEKPLSDAEMVSVTEIL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH
TSRLNTNGLSDVRIYPRGSDEIVIEIPKSADLERIERILTQQGVFIATIDNKTAYVGQDI
HHHCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCEEEEEECCCEEECCCCC
SYVEEPRMTASGYGVGFRLSSDGANNFAEVAYGKGGYPVELYMDGNLVSAPILSPDLADG
HHHCCCCCEECCCCEEEEECCCCCCCHHHHCCCCCCCEEEEEECCCEEECCCCCCCCCCC
RPHQSQVITVAGASPTREDIEKAWVIYTALKSGSLPVKVEIAYISSVSPTLGAEFIKGAL
CCCCCEEEEEECCCCCHHHHHHHEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHH
IAGLFAFLAVATVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIVAA
HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTGVDHQIVITDETIAGESKKVTKNIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFA
HCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ITTIAGVLMGILISRPAFARIMQYVLKH
HHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKLLKDPKVAILLVFVLASVLLLTFKGLSFGVDLSGGSTIVLNTEKPLSDAEMVSVTEIL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH
TSRLNTNGLSDVRIYPRGSDEIVIEIPKSADLERIERILTQQGVFIATIDNKTAYVGQDI
HHHCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCEEEEEECCCEEECCCCC
SYVEEPRMTASGYGVGFRLSSDGANNFAEVAYGKGGYPVELYMDGNLVSAPILSPDLADG
HHHCCCCCEECCCCEEEEECCCCCCCHHHHCCCCCCCEEEEEECCCEEECCCCCCCCCCC
RPHQSQVITVAGASPTREDIEKAWVIYTALKSGSLPVKVEIAYISSVSPTLGAEFIKGAL
CCCCCEEEEEECCCCCHHHHHHHEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHH
IAGLFAFLAVATVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIVAA
HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTGVDHQIVITDETIAGESKKVTKNIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFA
HCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ITTIAGVLMGILISRPAFARIMQYVLKH
HHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]