Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
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Accession | NC_009615 |
Length | 4,811,379 |
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The map label for this gene is lacZ [H]
Identifier: 150009705
GI number: 150009705
Start: 3753949
End: 3755781
Strand: Direct
Name: lacZ [H]
Synonym: BDI_3120
Alternate gene names: 150009705
Gene position: 3753949-3755781 (Clockwise)
Preceding gene: 150009704
Following gene: 150009707
Centisome position: 78.02
GC content: 45.17
Gene sequence:
>1833_bases ATGAAAAAGATTACCGTTGTTTGTTTAGCTCTTTGCTCCTTTCTTTTTGGGGGAGATCTCTTCTCCGTAAAGGCGCAAAT CCTAGAGAAGTTCACATTGCCTACCCCATGGACAGAGGAGGCATTGAAGGCTGAGATTCCTTTACCGGAATATCCACGTC CGCAGATGGTGCGTTCGGAATGGTTGAATCTGAATGGTATATGGGATTATATGGGAGGAAAAGACCTGCTTGATCCTGTT ACGGCAACCACCCCTCCAGTCTTTCCCGCAAAAGTAGAAAAGATACGTGTGCCGTATCCTCCGGAATCGGAATTATCCGG TATAGCTCGTGGGGGTGATACTTGCCTGTGGTATAAGCGTAGCTTCTCTGTTCCTCAAGCATGGAAGGGCAGGAATGTAT TGTTGAATTTTGGGGCTGTAGATCGGATCTCGTCTGTGTTTGTCAACGGTAAGAAGGTGGGTACCCATACGGGAGGGTAC GATGCTTTTAGTTTAAATATTACTGATTATTTGAAATCCGGTGAAAATGTCCTTGTGGTAGGTGCTTATGATCCTAACGA CGGCCGGGCCGCTTCGGGCAAGAACGGCTCACGTGGAGATTATATTTTTACCTCCGGTATCTGGCAAACCGTTTGGCTTG AACCGGTAGAGAAACAATATATTTCTCAGATTAAGCTAGTGCCCGATTTAAAAAATAATCGGTTGGAAGTAATTGCTTAT ACGGAGGATAAGGAGTTAAAGGTAACGGCTATCGCGGATAATGGTACTTCAGAGGTGGCAAGAACCGAAGGAAATTCCAA TATGAGTTTTTACTTGCCTATCCGGGAACCCCGTCTATGGAGTCCAGATGATCCTTTCTTGTATGGTTTGAAATTGCAGT TGAAAGATCGAAAGGGTGAGATAATAGATGAGGTATCTTCTTATTTTGGTATGCGTTCTGTTAGTATGGGAAAGGTAGAT GGTGTGCTTCGGCCTTTATTGAACGGGGAGTTTGTTTTCCATATCGGTCTTTTAGATCAAGGTTATTGGCCCGATGGCGC ATTTACTGCTCCTACCGACAAGGCTTTGTTGTATGATATAGAACTGGCGAAACGTGCGGGTTTTAATGTAATACGCAAGC ATATCAAAGTAGAGCCTCAACGTTGGTATTATCATTGTGACAGGCTTGGCTTGATGGTTTGGCAAGATATGCCGAATCTT TGGGAGCCGGATGGTGAGGATTCCGTGGCGGTTCGTAAACAGTTCCGTGACGAATTGAAAGTGATGATCGACCAACACGT CAGCTCGCCTTCTATCGTGATGTGGGTCCCGTTTAATGAGAATTGGGGAGCTTTTGAAGCGACAGACATCACAGCTTGGG TGAAAAAGTACGATCCGAATCGTTGGGTAAACGGTATGTCGGGATATAATTACGCTCCGGGCTATCGTAAGGCTTATGGA GATCCCAGAAATGGAGATTTCGTGGATATGCATCATTATGGCAAGATCGAGCCTAAGGCGATCCCCCGTCCCGATGATAA ACGTGCTGCGTCCCTTGGCGAATTCGGAGGAAAAGGTCTATTTGTGCGTGGGCATATGTGGCCTGTACGCAATGACGCTT ATGAGATGATGTTGAATAGAGAGGTCCTGACCGATACCTATGTATTAATGCTTACCGAGCTAGAGCAGATGATAAACTAT TTCGGACTAAGCACGGCCATCTATACGCAGACTACAGATGTGGAACATGAGATAAACGGCTTGGTCACTTATGACCGAAA GGTGGAGAAGATGGATCTGGAGAAAGTTAAGTACATCAATCAGGAAGTTATAAGATGTACAAGAAAAAAGTAG
Upstream 100 bases:
>100_bases CTCCGTCCGCAAGATAAGCCGGTCTTGATCGATAAGTTGGAGAAAGAAGATCAAGATTTGATCCGGAAATATTATCCGGA ATTACTTAAATAGTTGGTTT
Downstream 100 bases:
>100_bases CATATCCTCTAAAATGTTGATAATTAAAGAATACGGGATTCATTGATGAGTTCCGTGTTTTTTTATTTTGTAAGTAAAGA GCTAATATTTTTCCCTTTTG
Product: beta-glycosidase
Products: NA
Alternate protein names: Beta-gal; Lactase [H]
Number of amino acids: Translated: 610; Mature: 610
Protein sequence:
>610_residues MKKITVVCLALCSFLFGGDLFSVKAQILEKFTLPTPWTEEALKAEIPLPEYPRPQMVRSEWLNLNGIWDYMGGKDLLDPV TATTPPVFPAKVEKIRVPYPPESELSGIARGGDTCLWYKRSFSVPQAWKGRNVLLNFGAVDRISSVFVNGKKVGTHTGGY DAFSLNITDYLKSGENVLVVGAYDPNDGRAASGKNGSRGDYIFTSGIWQTVWLEPVEKQYISQIKLVPDLKNNRLEVIAY TEDKELKVTAIADNGTSEVARTEGNSNMSFYLPIREPRLWSPDDPFLYGLKLQLKDRKGEIIDEVSSYFGMRSVSMGKVD GVLRPLLNGEFVFHIGLLDQGYWPDGAFTAPTDKALLYDIELAKRAGFNVIRKHIKVEPQRWYYHCDRLGLMVWQDMPNL WEPDGEDSVAVRKQFRDELKVMIDQHVSSPSIVMWVPFNENWGAFEATDITAWVKKYDPNRWVNGMSGYNYAPGYRKAYG DPRNGDFVDMHHYGKIEPKAIPRPDDKRAASLGEFGGKGLFVRGHMWPVRNDAYEMMLNREVLTDTYVLMLTELEQMINY FGLSTAIYTQTTDVEHEINGLVTYDRKVEKMDLEKVKYINQEVIRCTRKK
Sequences:
>Translated_610_residues MKKITVVCLALCSFLFGGDLFSVKAQILEKFTLPTPWTEEALKAEIPLPEYPRPQMVRSEWLNLNGIWDYMGGKDLLDPV TATTPPVFPAKVEKIRVPYPPESELSGIARGGDTCLWYKRSFSVPQAWKGRNVLLNFGAVDRISSVFVNGKKVGTHTGGY DAFSLNITDYLKSGENVLVVGAYDPNDGRAASGKNGSRGDYIFTSGIWQTVWLEPVEKQYISQIKLVPDLKNNRLEVIAY TEDKELKVTAIADNGTSEVARTEGNSNMSFYLPIREPRLWSPDDPFLYGLKLQLKDRKGEIIDEVSSYFGMRSVSMGKVD GVLRPLLNGEFVFHIGLLDQGYWPDGAFTAPTDKALLYDIELAKRAGFNVIRKHIKVEPQRWYYHCDRLGLMVWQDMPNL WEPDGEDSVAVRKQFRDELKVMIDQHVSSPSIVMWVPFNENWGAFEATDITAWVKKYDPNRWVNGMSGYNYAPGYRKAYG DPRNGDFVDMHHYGKIEPKAIPRPDDKRAASLGEFGGKGLFVRGHMWPVRNDAYEMMLNREVLTDTYVLMLTELEQMINY FGLSTAIYTQTTDVEHEINGLVTYDRKVEKMDLEKVKYINQEVIRCTRKK >Mature_610_residues MKKITVVCLALCSFLFGGDLFSVKAQILEKFTLPTPWTEEALKAEIPLPEYPRPQMVRSEWLNLNGIWDYMGGKDLLDPV TATTPPVFPAKVEKIRVPYPPESELSGIARGGDTCLWYKRSFSVPQAWKGRNVLLNFGAVDRISSVFVNGKKVGTHTGGY DAFSLNITDYLKSGENVLVVGAYDPNDGRAASGKNGSRGDYIFTSGIWQTVWLEPVEKQYISQIKLVPDLKNNRLEVIAY TEDKELKVTAIADNGTSEVARTEGNSNMSFYLPIREPRLWSPDDPFLYGLKLQLKDRKGEIIDEVSSYFGMRSVSMGKVD GVLRPLLNGEFVFHIGLLDQGYWPDGAFTAPTDKALLYDIELAKRAGFNVIRKHIKVEPQRWYYHCDRLGLMVWQDMPNL WEPDGEDSVAVRKQFRDELKVMIDQHVSSPSIVMWVPFNENWGAFEATDITAWVKKYDPNRWVNGMSGYNYAPGYRKAYG DPRNGDFVDMHHYGKIEPKAIPRPDDKRAASLGEFGGKGLFVRGHMWPVRNDAYEMMLNREVLTDTYVLMLTELEQMINY FGLSTAIYTQTTDVEHEINGLVTYDRKVEKMDLEKVKYINQEVIRCTRKK
Specific function: The Wild-Type Enzyme Is An Ineffective Lactase. Two Classes Of Point Mutations Dramatically Improve Activity Of The Enzyme. [C]
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 2 family [H]
Homologues:
Organism=Escherichia coli, GI48994920, Length=396, Percent_Identity=22.7272727272727, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1787903, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24655438, Length=433, Percent_Identity=25.1732101616628, Blast_Score=87, Evalue=5e-17, Organism=Drosophila melanogaster, GI62471735, Length=433, Percent_Identity=25.1732101616628, Blast_Score=87, Evalue=5e-17, Organism=Drosophila melanogaster, GI19922582, Length=433, Percent_Identity=25.1732101616628, Blast_Score=86, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR011013 - InterPro: IPR014718 - InterPro: IPR006101 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR004199 - InterPro: IPR006102 - InterPro: IPR006103 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02929 Bgal_small_N; PF00703 Glyco_hydro_2; PF02836 Glyco_hydro_2_C; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.23 [H]
Molecular weight: Translated: 69501; Mature: 69501
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKITVVCLALCSFLFGGDLFSVKAQILEKFTLPTPWTEEALKAEIPLPEYPRPQMVRSE CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCHHHHHHH WLNLNGIWDYMGGKDLLDPVTATTPPVFPAKVEKIRVPYPPESELSGIARGGDTCLWYKR CCCCCCEEECCCCCHHHCCCCCCCCCCCCCCHHEEECCCCCCHHHHHHHCCCCEEEEEEE SFSVPQAWKGRNVLLNFGAVDRISSVFVNGKKVGTHTGGYDAFSLNITDYLKSGENVLVV CCCCCCCCCCCEEEEECCCHHHHHHHHCCCEEECCCCCCCEEEEEEHHHHHHCCCCEEEE GAYDPNDGRAASGKNGSRGDYIFTSGIWQTVWLEPVEKQYISQIKLVPDLKNNRLEVIAY EEECCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHEEECCCCCCCCEEEEEE TEDKELKVTAIADNGTSEVARTEGNSNMSFYLPIREPRLWSPDDPFLYGLKLQLKDRKGE ECCCCEEEEEEECCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCH IIDEVSSYFGMRSVSMGKVDGVLRPLLNGEFVFHIGLLDQGYWPDGAFTAPTDKALLYDI HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEE ELAKRAGFNVIRKHIKVEPQRWYYHCDRLGLMVWQDMPNLWEPDGEDSVAVRKQFRDELK HHHHHCCHHHHHHHHCCCCHHHEEEHHHHCEEHHHCCCCCCCCCCCCHHHHHHHHHHHHH VMIDQHVSSPSIVMWVPFNENWGAFEATDITAWVKKYDPNRWVNGMSGYNYAPGYRKAYG HHHHHCCCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHCC DPRNGDFVDMHHYGKIEPKAIPRPDDKRAASLGEFGGKGLFVRGHMWPVRNDAYEMMLNR CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHH EVLTDTYVLMLTELEQMINYFGLSTAIYTQTTDVEHEINGLVTYDRKVEKMDLEKVKYIN HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCEEEECCHHHHHHHHHHHHHH QEVIRCTRKK HHHHHHHCCC >Mature Secondary Structure MKKITVVCLALCSFLFGGDLFSVKAQILEKFTLPTPWTEEALKAEIPLPEYPRPQMVRSE CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCHHHHHHH WLNLNGIWDYMGGKDLLDPVTATTPPVFPAKVEKIRVPYPPESELSGIARGGDTCLWYKR CCCCCCEEECCCCCHHHCCCCCCCCCCCCCCHHEEECCCCCCHHHHHHHCCCCEEEEEEE SFSVPQAWKGRNVLLNFGAVDRISSVFVNGKKVGTHTGGYDAFSLNITDYLKSGENVLVV CCCCCCCCCCCEEEEECCCHHHHHHHHCCCEEECCCCCCCEEEEEEHHHHHHCCCCEEEE GAYDPNDGRAASGKNGSRGDYIFTSGIWQTVWLEPVEKQYISQIKLVPDLKNNRLEVIAY EEECCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHEEECCCCCCCCEEEEEE TEDKELKVTAIADNGTSEVARTEGNSNMSFYLPIREPRLWSPDDPFLYGLKLQLKDRKGE ECCCCEEEEEEECCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCH IIDEVSSYFGMRSVSMGKVDGVLRPLLNGEFVFHIGLLDQGYWPDGAFTAPTDKALLYDI HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEE ELAKRAGFNVIRKHIKVEPQRWYYHCDRLGLMVWQDMPNLWEPDGEDSVAVRKQFRDELK HHHHHCCHHHHHHHHCCCCHHHEEEHHHHCEEHHHCCCCCCCCCCCCHHHHHHHHHHHHH VMIDQHVSSPSIVMWVPFNENWGAFEATDITAWVKKYDPNRWVNGMSGYNYAPGYRKAYG HHHHHCCCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHCC DPRNGDFVDMHHYGKIEPKAIPRPDDKRAASLGEFGGKGLFVRGHMWPVRNDAYEMMLNR CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHH EVLTDTYVLMLTELEQMINYFGLSTAIYTQTTDVEHEINGLVTYDRKVEKMDLEKVKYIN HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCEEEECCHHHHHHHHHHHHHH QEVIRCTRKK HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8088532; 10360571; 9741105 [H]