Click here to switch to the map view.

The map label for this gene is amsH [H]

Identifier: 150008109

GI number: 150008109

Start: 1718387

End: 1719190

Strand: Reverse

Name: amsH [H]

Synonym: BDI_1473

Alternate gene names: 150008109

Gene position: 1719190-1718387 (Counterclockwise)

Preceding gene: 150008111

Following gene: 150008108

Centisome position: 35.73

GC content: 40.3

Gene sequence:

>804_bases
ATGAAAGTGAAATTAGTATCAGTAGTGGCATTGTTTGTCTTATTGTTAGGGGCTTGTTCTGTTCCTAAAGATGTGGTTTA
TTTCCAAGGAGTGGATGCCTTGACCCCCGAACAGGTGAGTAAGATGAATCAAGCTTATACCTCGAAGATTTGCCCTGATG
ACTTACTTACGATAACCGTTACGGCATGGGATCCGACAGTCGTTACTCCCTTTAATCCCCCTGTATATGCCTATGCAACT
CAAGGTGAGACTACGACGGTTTCTTCTGGTCAATTAAGAACGTATTTGGTTGATCAGGAAGGTGACATAAATTTCCCTGT
TTTGGGAAAGATCCATGTGGCGGGATTGACCAAGCAACAGTTAAGTGATAAAATGCAAGAAATGATCTCCCCTTATGTGA
AAGATGCTTTGGTTAATGTACAGATTGTTAATTATAAGGTCACGATGATGGGTGAGGTCTCTCGGCCGGGTGCGATTTCC
GTGAAAAATGATCGTCTTTCAATTTTAGATGCTATCGGTCAGGTCGGTGATTTGACAATTAACGCAAACCGTAAGAACAT
CTTGGTTATACGAGATAATAATGGAGAAAAGGAGTTTGCTCGTTTGGATATTACCGAGCCGGATATATTTACTTCCCCCT
ATTATTATCTTCAACAAAATGATGTTGTTTATGTGGAACCGAATAATGCGAAGAAGAGAAACGCCCGTTATAGTCAAGCC
CAACAATATAGTATAACCGTGTTCTCCTCAATTTTGAGCGCTGTATCTGTGATAACGACTGTTATATTGGCTATTACTAA
ATAA

Upstream 100 bases:

>100_bases
GCATCGTTATAGAAGTATCTTTATACTTGTGGTCCTTTTGAGACCTCATGTTCAAACTAAAAAACGTATATTTGCACCTT
ATTTGAAGAAAACAAAGATT

Downstream 100 bases:

>100_bases
TAATTAGATGATGGAAGTGAAAGACAACGAAACAATCGGACTTAAAAGTATTATCGTAAGATATCTATTGCATTGGAAAT
TATTTTTAGGGGTATTCCTG

Product: polysaccharide export outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKVKLVSVVALFVLLLGACSVPKDVVYFQGVDALTPEQVSKMNQAYTSKICPDDLLTITVTAWDPTVVTPFNPPVYAYAT
QGETTTVSSGQLRTYLVDQEGDINFPVLGKIHVAGLTKQQLSDKMQEMISPYVKDALVNVQIVNYKVTMMGEVSRPGAIS
VKNDRLSILDAIGQVGDLTINANRKNILVIRDNNGEKEFARLDITEPDIFTSPYYYLQQNDVVYVEPNNAKKRNARYSQA
QQYSITVFSSILSAVSVITTVILAITK

Sequences:

>Translated_267_residues
MKVKLVSVVALFVLLLGACSVPKDVVYFQGVDALTPEQVSKMNQAYTSKICPDDLLTITVTAWDPTVVTPFNPPVYAYAT
QGETTTVSSGQLRTYLVDQEGDINFPVLGKIHVAGLTKQQLSDKMQEMISPYVKDALVNVQIVNYKVTMMGEVSRPGAIS
VKNDRLSILDAIGQVGDLTINANRKNILVIRDNNGEKEFARLDITEPDIFTSPYYYLQQNDVVYVEPNNAKKRNARYSQA
QQYSITVFSSILSAVSVITTVILAITK
>Mature_267_residues
MKVKLVSVVALFVLLLGACSVPKDVVYFQGVDALTPEQVSKMNQAYTSKICPDDLLTITVTAWDPTVVTPFNPPVYAYAT
QGETTTVSSGQLRTYLVDQEGDINFPVLGKIHVAGLTKQQLSDKMQEMISPYVKDALVNVQIVNYKVTMMGEVSRPGAIS
VKNDRLSILDAIGQVGDLTINANRKNILVIRDNNGEKEFARLDITEPDIFTSPYYYLQQNDVVYVEPNNAKKRNARYSQA
QQYSITVFSSILSAVSVITTVILAITK

Specific function: Involved in the biosynthesis of amylovoran which functions as a virulence factor. Might be involved in the translocation of polysaccharides across the outer membrane [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1788376, Length=191, Percent_Identity=27.7486910994764, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 29479; Mature: 29479

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKLVSVVALFVLLLGACSVPKDVVYFQGVDALTPEQVSKMNQAYTSKICPDDLLTITV
CEEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
TAWDPTVVTPFNPPVYAYATQGETTTVSSGQLRTYLVDQEGDINFPVLGKIHVAGLTKQQ
EECCCEEECCCCCCEEEEEECCCEEEECCCCEEEEEECCCCCCCCCEEEEEEEECCCHHH
LSDKMQEMISPYVKDALVNVQIVNYKVTMMGEVSRPGAISVKNDRLSILDAIGQVGDLTI
HHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCCCCCEEEEECCHHHHHHHHCCCCCEEE
NANRKNILVIRDNNGEKEFARLDITEPDIFTSPYYYLQQNDVVYVEPNNAKKRNARYSQA
ECCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCEEEECCCCCCHHCCCHHHH
QQYSITVFSSILSAVSVITTVILAITK
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVKLVSVVALFVLLLGACSVPKDVVYFQGVDALTPEQVSKMNQAYTSKICPDDLLTITV
CEEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
TAWDPTVVTPFNPPVYAYATQGETTTVSSGQLRTYLVDQEGDINFPVLGKIHVAGLTKQQ
EECCCEEECCCCCCEEEEEECCCEEEECCCCEEEEEECCCCCCCCCEEEEEEEECCCHHH
LSDKMQEMISPYVKDALVNVQIVNYKVTMMGEVSRPGAISVKNDRLSILDAIGQVGDLTI
HHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCCCCCEEEEECCHHHHHHHHCCCCCEEE
NANRKNILVIRDNNGEKEFARLDITEPDIFTSPYYYLQQNDVVYVEPNNAKKRNARYSQA
ECCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCEEEECCCCCCHHCCCHHHH
QQYSITVFSSILSAVSVITTVILAITK
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7596293 [H]