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The map label for this gene is ihfB [H]

Identifier: 150005930

GI number: 150005930

Start: 4269504

End: 4269788

Strand: Direct

Name: ihfB [H]

Synonym: BVU_3428

Alternate gene names: 150005930

Gene position: 4269504-4269788 (Clockwise)

Preceding gene: 150005929

Following gene: 150005933

Centisome position: 82.69

GC content: 43.86

Gene sequence:

>285_bases
ATGACGAAAGCAGAATTATGTAAGAAAATATCCGCAAAGACGGGATGTGATGCCCAGACTATACTGGCAGTAGTGGAGAG
TTTGATGGTGGAAGTGAAGGAATCACTGGAGAAGGGAGAGAATGTTTATCTGAGAGGCTTCGGCAGCTTTATCGTAAAGC
AGCGTGCAGAAAAGACTACACGAAACATTTCGAAGAATACCACTATTATTATACCGGCTCATAACATCCCGGCTTTTAAG
CCTTCCAAGGAACTGGTGAAGCTGGTGAACAAACTGGAGGATTGA

Upstream 100 bases:

>100_bases
TTAGTTGCTTTTGTACTGATTTATAGAGCAAAAACGAGTTTGCTTGGTGTTTGTTTGAGGTGCATTGCTTATCTTCGTGT
GCTTTTTTAAGAATGTAGAA

Downstream 100 bases:

>100_bases
TAGCTGTTTGCAAAGGATAAACCATAAAAGCGAGCCGTTTCTTGACTCGCTTTTATGGTTTATCTTAAATGGGCTTTTGC
ACTACTTTACTTCAATAGCT

Product: DNA-binding protein HU

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTTRNISKNTTIIIPAHNIPAFK
PSKELVKLVNKLED

Sequences:

>Translated_94_residues
MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTTRNISKNTTIIIPAHNIPAFK
PSKELVKLVNKLED
>Mature_93_residues
TKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTTRNISKNTTIIIPAHNIPAFKP
SKELVKLVNKLED

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=36.6666666666667, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1790433, Length=85, Percent_Identity=40, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10433; Mature: 10302

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
RNISKNTTIIIPAHNIPAFKPSKELVKLVNKLED
HHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
RNISKNTTIIIPAHNIPAFKPSKELVKLVNKLED
HHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA